These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

107 related articles for article (PubMed ID: 28542180)

  • 1. Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers.
    Grüning BA; Rasche E; Rebolledo-Jaramillo B; Eberhard C; Houwaart T; Chilton J; Coraor N; Backofen R; Taylor J; Nekrutenko A
    PLoS Comput Biol; 2017 May; 13(5):e1005425. PubMed ID: 28542180
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.
    Afgan E; Baker D; van den Beek M; Blankenberg D; Bouvier D; Čech M; Chilton J; Clements D; Coraor N; Eberhard C; Grüning B; Guerler A; Hillman-Jackson J; Von Kuster G; Rasche E; Soranzo N; Turaga N; Taylor J; Nekrutenko A; Goecks J
    Nucleic Acids Res; 2016 Jul; 44(W1):W3-W10. PubMed ID: 27137889
    [TBL] [Abstract][Full Text] [Related]  

  • 3. qPortal: A platform for data-driven biomedical research.
    Mohr C; Friedrich A; Wojnar D; Kenar E; Polatkan AC; Codrea MC; Czemmel S; Kohlbacher O; Nahnsen S
    PLoS One; 2018; 13(1):e0191603. PubMed ID: 29352322
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Analysis of next-generation sequencing data using Galaxy.
    Blankenberg D; Hillman-Jackson J
    Methods Mol Biol; 2014; 1150():21-43. PubMed ID: 24743989
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Barriers and enablers to the acceptance of bioinformatics tools: a qualitative study.
    Shachak A; Shuval K; Fine S
    J Med Libr Assoc; 2007 Oct; 95(4):454-8. PubMed ID: 17971896
    [No Abstract]   [Full Text] [Related]  

  • 6. PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data.
    Anslan S; Bahram M; Hiiesalu I; Tedersoo L
    Mol Ecol Resour; 2017 Nov; 17(6):e234-e240. PubMed ID: 28544559
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BioUML-towards a universal research platform.
    Kolpakov F; Akberdin I; Kiselev I; Kolmykov S; Kondrakhin Y; Kulyashov M; Kutumova E; Pintus S; Ryabova A; Sharipov R; Yevshin I; Zhatchenko S; Kel A
    Nucleic Acids Res; 2022 Jul; 50(W1):W124-W131. PubMed ID: 35536253
    [TBL] [Abstract][Full Text] [Related]  

  • 8. From Bench to Bedside: A View on Bioinformatics Pipelines.
    Flores B; Hose D; Seckinger A; Knaup P; Ganzinger M
    Stud Health Technol Inform; 2017; 245():375-378. PubMed ID: 29295119
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Cancer Informatics: New Tools for a Data-Driven Age in Cancer Research.
    Kibbe W; Klemm J; Quackenbush J
    Cancer Res; 2017 Nov; 77(21):e1-e2. PubMed ID: 29092926
    [No Abstract]   [Full Text] [Related]  

  • 10. KNIME for reproducible cross-domain analysis of life science data.
    Fillbrunn A; Dietz C; Pfeuffer J; Rahn R; Landrum GA; Berthold MR
    J Biotechnol; 2017 Nov; 261():149-156. PubMed ID: 28757290
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data.
    Kobayashi M; Ohyanagi H; Takanashi H; Asano S; Kudo T; Kajiya-Kanegae H; Nagano AJ; Tainaka H; Tokunaga T; Sazuka T; Iwata H; Tsutsumi N; Yano K
    DNA Res; 2017 Aug; 24(4):397-405. PubMed ID: 28498906
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNASeqBrowser: a genome browser for simultaneous visualization of raw strand specific RNAseq reads and UCSC genome browser custom tracks.
    An J; Lai J; Wood DL; Sajjanhar A; Wang C; Tevz G; Lehman ML; Nelson CC
    BMC Genomics; 2015 Mar; 16(1):145. PubMed ID: 25766521
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data.
    Carissimo G; van den Beek M; Vernick KD; Antoniewski C
    PLoS One; 2017; 12(1):e0168397. PubMed ID: 28045932
    [TBL] [Abstract][Full Text] [Related]  

  • 14. LIPID MAPS: Serving the next generation of lipid researchers with tools, resources, data, and training.
    O'Donnell VB; Dennis EA; Wakelam MJO; Subramaniam S
    Sci Signal; 2019 Jan; 12(563):. PubMed ID: 30622195
    [TBL] [Abstract][Full Text] [Related]  

  • 15. VING: a software for visualization of deep sequencing signals.
    Descrimes M; Ben Zouari Y; Wery M; Legendre R; Gautheret D; Morillon A
    BMC Res Notes; 2015 Sep; 8():419. PubMed ID: 26346985
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Targeted virus detection in next-generation sequencing data using an automated e-probe based approach.
    Visser M; Burger JT; Maree HJ
    Virology; 2016 Aug; 495():122-8. PubMed ID: 27209446
    [TBL] [Abstract][Full Text] [Related]  

  • 17. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics.
    Kouskoumvekaki I; Shublaq N; Brunak S
    Brief Bioinform; 2014 Nov; 15(6):942-52. PubMed ID: 23908249
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PEGR: a flexible management platform for reproducible epigenomic and genomic research.
    Shao D; Kellogg GD; Nematbakhsh A; Kuntala PK; Mahony S; Pugh BF; Lai WKM
    Genome Biol; 2022 Apr; 23(1):99. PubMed ID: 35440038
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A Bioinformatic Pipeline for Monitoring of the Mutational Stability of Viral Drug Targets with Deep-Sequencing Technology.
    Kravatsky Y; Chechetkin V; Fedoseeva D; Gorbacheva M; Kravatskaya G; Kretova O; Tchurikov N
    Viruses; 2017 Nov; 9(12):. PubMed ID: 29168754
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.