These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

184 related articles for article (PubMed ID: 28542466)

  • 21. Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads.
    Chen HI; Liu Y; Zou Y; Lai Z; Sarkar D; Huang Y; Chen Y
    BMC Genomics; 2015; 16 Suppl 7(Suppl 7):S14. PubMed ID: 26099631
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host nematode RNA by Cappable-seq™.
    Luck AN; Slatko BE; Foster JM
    PLoS One; 2017; 12(3):e0173186. PubMed ID: 28291780
    [TBL] [Abstract][Full Text] [Related]  

  • 23. rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data.
    Shen S; Park JW; Lu ZX; Lin L; Henry MD; Wu YN; Zhou Q; Xing Y
    Proc Natl Acad Sci U S A; 2014 Dec; 111(51):E5593-601. PubMed ID: 25480548
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS.
    Park JW; Tokheim C; Shen S; Xing Y
    Methods Mol Biol; 2013; 1038():171-9. PubMed ID: 23872975
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models.
    Mirauta B; Nicolas P; Richard H
    Bioinformatics; 2014 May; 30(10):1409-16. PubMed ID: 24470570
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Statistical detection of differentially expressed genes based on RNA-seq: from biological to phylogenetic replicates.
    Gu X
    Brief Bioinform; 2016 Mar; 17(2):243-8. PubMed ID: 26108230
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Transcript mapping based on dRNA-seq data.
    Bischler T; Kopf M; Voß B
    BMC Bioinformatics; 2014 Apr; 15():122. PubMed ID: 24780064
    [TBL] [Abstract][Full Text] [Related]  

  • 28. EpiNano: Detection of m
    Liu H; Begik O; Novoa EM
    Methods Mol Biol; 2021; 2298():31-52. PubMed ID: 34085237
    [TBL] [Abstract][Full Text] [Related]  

  • 29. NBLDA: negative binomial linear discriminant analysis for RNA-Seq data.
    Dong K; Zhao H; Tong T; Wan X
    BMC Bioinformatics; 2016 Sep; 17(1):369. PubMed ID: 27623864
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing.
    Maestri S; Furlan M; Mulroney L; Coscujuela Tarrero L; Ugolini C; Dalla Pozza F; Leonardi T; Birney E; Nicassio F; Pelizzola M
    Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38279646
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Discrete distributional differential expression (D3E)--a tool for gene expression analysis of single-cell RNA-seq data.
    Delmans M; Hemberg M
    BMC Bioinformatics; 2016 Feb; 17():110. PubMed ID: 26927822
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Construction of Trypanosoma brucei Illumina RNA-Seq libraries enriched for transcript ends.
    Kolev NG; Ullu E; Tschudi C
    Methods Mol Biol; 2015; 1201():165-75. PubMed ID: 25388113
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Investigating CRISPR RNA Biogenesis and Function Using RNA-seq.
    Heidrich N; Dugar G; Vogel J; Sharma CM
    Methods Mol Biol; 2015; 1311():1-21. PubMed ID: 25981463
    [TBL] [Abstract][Full Text] [Related]  

  • 34. ALGAEFUN with MARACAS, microALGAE FUNctional enrichment tool for MicroAlgae RnA-seq and Chip-seq AnalysiS.
    Romero-Losada AB; Arvanitidou C; de Los Reyes P; García-González M; Romero-Campero FJ
    BMC Bioinformatics; 2022 Mar; 23(1):113. PubMed ID: 35361110
    [TBL] [Abstract][Full Text] [Related]  

  • 35. A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues.
    Li Y; Xie X
    BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S11. PubMed ID: 23735186
    [TBL] [Abstract][Full Text] [Related]  

  • 36. CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data.
    Kumar PK; Hoang TV; Robinson ML; Tsonis PA; Liang C
    Sci Rep; 2015 Aug; 5():13443. PubMed ID: 26304587
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Practicability of detecting somatic point mutation from RNA high throughput sequencing data.
    Sheng Q; Zhao S; Li CI; Shyr Y; Guo Y
    Genomics; 2016 May; 107(5):163-9. PubMed ID: 27046520
    [TBL] [Abstract][Full Text] [Related]  

  • 38. LPEseq: Local-Pooled-Error Test for RNA Sequencing Experiments with a Small Number of Replicates.
    Gim J; Won S; Park T
    PLoS One; 2016; 11(8):e0159182. PubMed ID: 27532300
    [TBL] [Abstract][Full Text] [Related]  

  • 39. SimFuse: A Novel Fusion Simulator for RNA Sequencing (RNA-Seq) Data.
    Tan Y; Tambouret Y; Monti S
    Biomed Res Int; 2015; 2015():780519. PubMed ID: 26839886
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Targeted LncRNA Sequencing with the SeqCap RNA Enrichment System.
    Tan JC; Bouriakov VD; Feng L; Richmond TA; Burgess D
    Methods Mol Biol; 2016; 1402():73-100. PubMed ID: 26721485
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.