184 related articles for article (PubMed ID: 28552653)
1. High-throughput metaproteomics data analysis with Unipept: A tutorial.
Mesuere B; Van der Jeugt F; Willems T; Naessens T; Devreese B; Martens L; Dawyndt P
J Proteomics; 2018 Jan; 171():11-22. PubMed ID: 28552653
[TBL] [Abstract][Full Text] [Related]
2. The Unipept metaproteomics analysis pipeline.
Mesuere B; Debyser G; Aerts M; Devreese B; Vandamme P; Dawyndt P
Proteomics; 2015 Apr; 15(8):1437-42. PubMed ID: 25477242
[TBL] [Abstract][Full Text] [Related]
3. The unique peptidome: Taxon-specific tryptic peptides as biomarkers for targeted metaproteomics.
Mesuere B; Van der Jeugt F; Devreese B; Vandamme P; Dawyndt P
Proteomics; 2016 Sep; 16(17):2313-8. PubMed ID: 27380722
[TBL] [Abstract][Full Text] [Related]
4. Unipept CLI 2.0: adding support for visualizations and functional annotations.
Verschaffelt P; Van Thienen P; Van Den Bossche T; Van der Jeugt F; De Tender C; Martens L; Dawyndt P; Mesuere B
Bioinformatics; 2020 Aug; 36(14):4220-4221. PubMed ID: 32492134
[TBL] [Abstract][Full Text] [Related]
5. Unipept 4.0: Functional Analysis of Metaproteome Data.
Gurdeep Singh R; Tanca A; Palomba A; Van der Jeugt F; Verschaffelt P; Uzzau S; Martens L; Dawyndt P; Mesuere B
J Proteome Res; 2019 Feb; 18(2):606-615. PubMed ID: 30465426
[TBL] [Abstract][Full Text] [Related]
6. Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples.
Mesuere B; Devreese B; Debyser G; Aerts M; Vandamme P; Dawyndt P
J Proteome Res; 2012 Dec; 11(12):5773-80. PubMed ID: 23153116
[TBL] [Abstract][Full Text] [Related]
7. Unipept web services for metaproteomics analysis.
Mesuere B; Willems T; Van der Jeugt F; Devreese B; Vandamme P; Dawyndt P
Bioinformatics; 2016 Jun; 32(11):1746-8. PubMed ID: 26819472
[TBL] [Abstract][Full Text] [Related]
8. Unipept Desktop: A Faster, More Powerful Metaproteomics Results Analysis Tool.
Verschaffelt P; Van Den Bossche T; Martens L; Dawyndt P; Mesuere B
J Proteome Res; 2021 Apr; 20(4):2005-2009. PubMed ID: 33401902
[TBL] [Abstract][Full Text] [Related]
9. Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for Seamless End-to-End Metaproteomics Data Analysis.
Van Den Bossche T; Verschaffelt P; Schallert K; Barsnes H; Dawyndt P; Benndorf D; Renard BY; Mesuere B; Martens L; Muth T
J Proteome Res; 2020 Aug; 19(8):3562-3566. PubMed ID: 32431147
[TBL] [Abstract][Full Text] [Related]
10. A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane.
Schiebenhoefer H; Schallert K; Renard BY; Trappe K; Schmid E; Benndorf D; Riedel K; Muth T; Fuchs S
Nat Protoc; 2020 Oct; 15(10):3212-3239. PubMed ID: 32859984
[TBL] [Abstract][Full Text] [Related]
11. Metaproteomic analysis using the Galaxy framework.
Jagtap PD; Blakely A; Murray K; Stewart S; Kooren J; Johnson JE; Rhodus NL; Rudney J; Griffin TJ
Proteomics; 2015 Oct; 15(20):3553-65. PubMed ID: 26058579
[TBL] [Abstract][Full Text] [Related]
12. Survey of metaproteomics software tools for functional microbiome analysis.
Sajulga R; Easterly C; Riffle M; Mesuere B; Muth T; Mehta S; Kumar P; Johnson J; Gruening BA; Schiebenhoefer H; Kolmeder CA; Fuchs S; Nunn BL; Rudney J; Griffin TJ; Jagtap PD
PLoS One; 2020; 15(11):e0241503. PubMed ID: 33170893
[TBL] [Abstract][Full Text] [Related]
13. ProteoStorm: An Ultrafast Metaproteomics Database Search Framework.
Beyter D; Lin MS; Yu Y; Pieper R; Bafna V
Cell Syst; 2018 Oct; 7(4):463-467.e6. PubMed ID: 30268435
[TBL] [Abstract][Full Text] [Related]
14. Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.
Abraham PE; Giannone RJ; Xiong W; Hettich RL
Curr Protoc Bioinformatics; 2014 Jun; 46():13.26.1-13.26.14. PubMed ID: 24939130
[TBL] [Abstract][Full Text] [Related]
15. An integrated workflow for enhanced taxonomic and functional coverage of the mouse fecal metaproteome.
Nalpas N; Hoyles L; Anselm V; Ganief T; Martinez-Gili L; Grau C; Droste-Borel I; Davidovic L; Altafaj X; Dumas ME; Macek B
Gut Microbes; 2021; 13(1):1994836. PubMed ID: 34763597
[TBL] [Abstract][Full Text] [Related]
16. Faecal proteomics: A tool to investigate dysbiosis and inflammation in patients with cystic fibrosis.
Debyser G; Mesuere B; Clement L; Van de Weygaert J; Van Hecke P; Duytschaever G; Aerts M; Dawyndt P; De Boeck K; Vandamme P; Devreese B
J Cyst Fibros; 2016 Mar; 15(2):242-50. PubMed ID: 26330184
[TBL] [Abstract][Full Text] [Related]
17. Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics.
Lohmann P; Schäpe SS; Haange SB; Oliphant K; Allen-Vercoe E; Jehmlich N; Von Bergen M
Expert Rev Proteomics; 2020 Feb; 17(2):163-173. PubMed ID: 32174200
[No Abstract] [Full Text] [Related]
18. Sipros Ensemble improves database searching and filtering for complex metaproteomics.
Guo X; Li Z; Yao Q; Mueller RS; Eng JK; Tabb DL; Hervey WJ; Pan C
Bioinformatics; 2018 Mar; 34(5):795-802. PubMed ID: 29028897
[TBL] [Abstract][Full Text] [Related]
19. Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota-Implementation and Computational Analysis.
Aakko J; Pietilä S; Suomi T; Mahmoudian M; Toivonen R; Kouvonen P; Rokka A; Hänninen A; Elo LL
J Proteome Res; 2020 Jan; 19(1):432-436. PubMed ID: 31755272
[TBL] [Abstract][Full Text] [Related]
20. Genome-resolved metaproteomic characterization of preterm infant gut microbiota development reveals species-specific metabolic shifts and variabilities during early life.
Xiong W; Brown CT; Morowitz MJ; Banfield JF; Hettich RL
Microbiome; 2017 Jul; 5(1):72. PubMed ID: 28693612
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]