BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 28578660)

  • 1. Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance.
    Oda T; Lim K; Tomii K
    BMC Bioinformatics; 2017 Jun; 18(1):288. PubMed ID: 28578660
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SMI-BLAST: a novel supervised search framework based on PSI-BLAST for protein remote homology detection.
    Jin X; Liao Q; Wei H; Zhang J; Liu B
    Bioinformatics; 2021 May; 37(7):913-920. PubMed ID: 32898222
    [TBL] [Abstract][Full Text] [Related]  

  • 3. IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
    Schäffer AA; Wolf YI; Ponting CP; Koonin EV; Aravind L; Altschul SF
    Bioinformatics; 1999 Dec; 15(12):1000-11. PubMed ID: 10745990
    [TBL] [Abstract][Full Text] [Related]  

  • 4. S2L-PSIBLAST: a supervised two-layer search framework based on PSI-BLAST for protein remote homology detection.
    Jin X; Liao Q; Liu B
    Bioinformatics; 2021 Dec; 37(23):4321-4327. PubMed ID: 34170287
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
    Agrawal A; Huang X
    Bioinformatics; 2009 Apr; 25(8):1082-3. PubMed ID: 19251771
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation.
    Stevens FJ
    J Mol Recognit; 2005; 18(2):139-49. PubMed ID: 15558595
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A comparison of position-specific score matrices based on sequence and structure alignments.
    Panchenko AR; Bryant SH
    Protein Sci; 2002 Feb; 11(2):361-70. PubMed ID: 11790846
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A performance enhanced PSI-BLAST based on hybrid alignment.
    Li Y; Chia N; Lauria M; Bundschuh R
    Bioinformatics; 2011 Jan; 27(1):31-7. PubMed ID: 21115441
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches.
    Lee MM; Chan MK; Bundschuh R
    Bioinformatics; 2008 Jun; 24(11):1339-43. PubMed ID: 18403442
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Detection of homologous proteins by an intermediate sequence search.
    John B; Sali A
    Protein Sci; 2004 Jan; 13(1):54-62. PubMed ID: 14691221
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PSI-BLAST tutorial.
    Bhagwat M; Aravind L
    Methods Mol Biol; 2007; 395():177-86. PubMed ID: 17993673
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Powerful fusion: PSI-BLAST and consensus sequences.
    Przybylski D; Rost B
    Bioinformatics; 2008 Sep; 24(18):1987-93. PubMed ID: 18678588
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Fold-specific sequence scoring improves protein sequence matching.
    Leelananda SP; Kloczkowski A; Jernigan RL
    BMC Bioinformatics; 2016 Aug; 17(1):328. PubMed ID: 27578239
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Code optimization of the subroutine to remove near identical matches in the sequence database homology search tool PSI-BLAST.
    Aspnäs M; Mattila K; Osowski K; Westerholm J
    J Comput Biol; 2010 Jun; 17(6):819-23. PubMed ID: 20583927
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A protein structural classes prediction method based on predicted secondary structure and PSI-BLAST profile.
    Ding S; Li Y; Shi Z; Yan S
    Biochimie; 2014 Feb; 97():60-5. PubMed ID: 24067326
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Distant homology detection using a LEngth and STructure-based sequence Alignment Tool (LESTAT).
    Lee MM; Bundschuh R; Chan MK
    Proteins; 2008 May; 71(3):1409-19. PubMed ID: 18076050
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
    Shah AR; Oehmen CS; Webb-Robertson BJ
    Bioinformatics; 2008 Mar; 24(6):783-90. PubMed ID: 18245127
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A comparison of scoring functions for protein sequence profile alignment.
    Edgar RC; Sjölander K
    Bioinformatics; 2004 May; 20(8):1301-8. PubMed ID: 14962936
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues.
    Anand B; Gowri VS; Srinivasan N
    Bioinformatics; 2005 Jun; 21(12):2821-6. PubMed ID: 15817691
    [TBL] [Abstract][Full Text] [Related]  

  • 20. LZW-Kernel: fast kernel utilizing variable length code blocks from LZW compressors for protein sequence classification.
    Filatov G; Bauwens B; Kertész-Farkas A
    Bioinformatics; 2018 Oct; 34(19):3281-3288. PubMed ID: 29741583
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.