90 related articles for article (PubMed ID: 28579515)
1. ChromBiSim: Interactive chromatin biclustering using a simple approach.
Noureen N; Zohaib HM; Qadir MA; Fazal S
Genomics; 2017 Oct; 109(5-6):353-361. PubMed ID: 28579515
[TBL] [Abstract][Full Text] [Related]
2. ChromClust: A semi-supervised chromatin clustering toolkit for mining histone modifications interplay.
Noureen N; Touseef M; Fazal S; Qadir MA
Genomics; 2015 Dec; 106(6):355-9. PubMed ID: 26551295
[TBL] [Abstract][Full Text] [Related]
3. ChARM: Discovery of combinatorial chromatin modification patterns in hepatitis B virus X-transformed mouse liver cancer using association rule mining.
Park SH; Lee SM; Kim YJ; Kim S
BMC Bioinformatics; 2016 Dec; 17(Suppl 16):452. PubMed ID: 28105934
[TBL] [Abstract][Full Text] [Related]
4. Finding combinatorial histone code by semi-supervised biclustering.
Teng L; Tan K
BMC Genomics; 2012 Jul; 13():301. PubMed ID: 22759587
[TBL] [Abstract][Full Text] [Related]
5. Computational methods to explore chromatin state dynamics.
Orouji E; Raman AT
Brief Bioinform; 2022 Nov; 23(6):. PubMed ID: 36208178
[TBL] [Abstract][Full Text] [Related]
6. Interactive analysis of single-cell epigenomic landscapes with ChromSCape.
Prompsy P; Kirchmeier P; Marsolier J; Deloger M; Servant N; Vallot C
Nat Commun; 2020 Nov; 11(1):5702. PubMed ID: 33177523
[TBL] [Abstract][Full Text] [Related]
7. Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome.
Mammana A; Chung HR
Genome Biol; 2015 Jul; 16(1):151. PubMed ID: 26206277
[TBL] [Abstract][Full Text] [Related]
8. A computational approach for the functional classification of the epigenome.
Gandolfi F; Tramontano A
Epigenetics Chromatin; 2017; 10():26. PubMed ID: 28515787
[TBL] [Abstract][Full Text] [Related]
9. DIVAN: accurate identification of non-coding disease-specific risk variants using multi-omics profiles.
Chen L; Jin P; Qin ZS
Genome Biol; 2016 Dec; 17(1):252. PubMed ID: 27923386
[TBL] [Abstract][Full Text] [Related]
10. Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps.
Mortazavi A; Pepke S; Jansen C; Marinov GK; Ernst J; Kellis M; Hardison RC; Myers RM; Wold BJ
Genome Res; 2013 Dec; 23(12):2136-48. PubMed ID: 24170599
[TBL] [Abstract][Full Text] [Related]
11. Combinatorial epigenetic patterns as quantitative predictors of chromatin biology.
Cieślik M; Bekiranov S
BMC Genomics; 2014 Jan; 15():76. PubMed ID: 24472558
[TBL] [Abstract][Full Text] [Related]
12. Combinatorial chromatin modification patterns in the human genome revealed by subspace clustering.
Ucar D; Hu Q; Tan K
Nucleic Acids Res; 2011 May; 39(10):4063-75. PubMed ID: 21266477
[TBL] [Abstract][Full Text] [Related]
13. Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types.
Meng N; Machiraju R; Huang K
BMC Bioinformatics; 2016 Dec; 17(Suppl 17):534. PubMed ID: 28155643
[TBL] [Abstract][Full Text] [Related]
14. EpiAlign: an alignment-based bioinformatic tool for comparing chromatin state sequences.
Ge X; Zhang H; Xie L; Li WV; Kwon SB; Li JJ
Nucleic Acids Res; 2019 Jul; 47(13):e77. PubMed ID: 31045217
[TBL] [Abstract][Full Text] [Related]
15. An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum.
Veluchamy A; Rastogi A; Lin X; Lombard B; Murik O; Thomas Y; Dingli F; Rivarola M; Ott S; Liu X; Sun Y; Rabinowicz PD; McCarthy J; Allen AE; Loew D; Bowler C; Tirichine L
Genome Biol; 2015 May; 16(1):102. PubMed ID: 25990474
[TBL] [Abstract][Full Text] [Related]
16. Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states.
Li WV; Razaee ZS; Li JJ
BMC Genomics; 2016 Jan; 17 Suppl 1(Suppl 1):10. PubMed ID: 26817822
[TBL] [Abstract][Full Text] [Related]
17. Uncovering combinatorial interactions in chromatin.
Wood IC
Epigenomics; 2011 Jun; 3(3):371-9. PubMed ID: 22122343
[TBL] [Abstract][Full Text] [Related]
18. Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definition.
Agirre E; Oldfield AJ; Bellora N; Segelle A; Luco RF
Nat Commun; 2021 Jan; 12(1):682. PubMed ID: 33514745
[TBL] [Abstract][Full Text] [Related]
19. Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
Zacher B; Michel M; Schwalb B; Cramer P; Tresch A; Gagneur J
PLoS One; 2017; 12(1):e0169249. PubMed ID: 28056037
[TBL] [Abstract][Full Text] [Related]
20. ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.
Hon G; Ren B; Wang W
PLoS Comput Biol; 2008 Oct; 4(10):e1000201. PubMed ID: 18927605
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
