BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

241 related articles for article (PubMed ID: 28583074)

  • 1. A comprehensive assessment of RNA-seq protocols for degraded and low-quantity samples.
    Schuierer S; Carbone W; Knehr J; Petitjean V; Fernandez A; Sultan M; Roma G
    BMC Genomics; 2017 Jun; 18(1):442. PubMed ID: 28583074
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A comparative analysis of library prep approaches for sequencing low input translatome samples.
    Song Y; Milon B; Ott S; Zhao X; Sadzewicz L; Shetty A; Boger ET; Tallon LJ; Morell RJ; Mahurkar A; Hertzano R
    BMC Genomics; 2018 Sep; 19(1):696. PubMed ID: 30241496
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Systematic evaluation of RNA-Seq preparation protocol performance.
    Chao HP; Chen Y; Takata Y; Tomida MW; Lin K; Kirk JS; Simper MS; Mikulec CD; Rundhaug JE; Fischer SM; Chen T; Tang DG; Lu Y; Shen J
    BMC Genomics; 2019 Jul; 20(1):571. PubMed ID: 31296163
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing.
    Cieslik M; Chugh R; Wu YM; Wu M; Brennan C; Lonigro R; Su F; Wang R; Siddiqui J; Mehra R; Cao X; Lucas D; Chinnaiyan AM; Robinson D
    Genome Res; 2015 Sep; 25(9):1372-81. PubMed ID: 26253700
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
    Zhao W; He X; Hoadley KA; Parker JS; Hayes DN; Perou CM
    BMC Genomics; 2014 Jun; 15(1):419. PubMed ID: 24888378
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Systematic analysis of TruSeq, SMARTer and SMARTer Ultra-Low RNA-seq kits for standard, low and ultra-low quantity samples.
    Palomares MA; Dalmasso C; Bonnet E; Derbois C; Brohard-Julien S; Ambroise C; Battail C; Deleuze JF; Olaso R
    Sci Rep; 2019 May; 9(1):7550. PubMed ID: 31101892
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Application of the 3' mRNA-Seq using unique molecular identifiers in highly degraded RNA derived from formalin-fixed, paraffin-embedded tissue.
    Jang JS; Holicky E; Lau J; McDonough S; Mutawe M; Koster MJ; Warrington KJ; Cuninngham JM
    BMC Genomics; 2021 Oct; 22(1):759. PubMed ID: 34689749
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparison of Two Illumina Whole Transcriptome RNA Sequencing Library Preparation Methods Using Human Cancer FFPE Specimens.
    Wang D; Rolfe PA; Foernzler D; O'Rourke D; Zhao S; Scheuenpflug J; Feng Z
    Technol Cancer Res Treat; 2022; 21():15330338221076304. PubMed ID: 35138205
    [No Abstract]   [Full Text] [Related]  

  • 9. A comparative analysis of RNA sequencing methods with ribosome RNA depletion for degraded and low-input total RNA from formalin-fixed and paraffin-embedded samples.
    Lin X; Qiu L; Song X; Hou J; Chen W; Zhao J
    BMC Genomics; 2019 Nov; 20(1):831. PubMed ID: 31703614
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Strand-Specific Transcriptome Sequencing Using SMART Technology.
    Bostick M; Bolduc N; Lehman A; Farmer A
    Curr Protoc Mol Biol; 2016 Oct; 116():4.27.1-4.27.18. PubMed ID: 27723087
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparison of library construction kits for mRNA sequencing in the Illumina platform.
    Park YS; Kim S; Park DG; Kim DH; Yoon KW; Shin W; Han K
    Genes Genomics; 2019 Oct; 41(10):1233-1240. PubMed ID: 31350733
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction.
    Herbert ZT; Kershner JP; Butty VL; Thimmapuram J; Choudhari S; Alekseyev YO; Fan J; Podnar JW; Wilcox E; Gipson J; Gillaspy A; Jepsen K; BonDurant SS; Morris K; Berkeley M; LeClerc A; Simpson SD; Sommerville G; Grimmett L; Adams M; Levine SS
    BMC Genomics; 2018 Mar; 19(1):199. PubMed ID: 29703133
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data.
    Alberti A; Belser C; Engelen S; Bertrand L; Orvain C; Brinas L; Cruaud C; Giraut L; Da Silva C; Firmo C; Aury JM; Wincker P
    BMC Genomics; 2014 Oct; 15(1):912. PubMed ID: 25331572
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A simple strand-specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods.
    Sultan M; Dökel S; Amstislavskiy V; Wuttig D; Sültmann H; Lehrach H; Yaspo ML
    Biochem Biophys Res Commun; 2012 Jun; 422(4):643-6. PubMed ID: 22609201
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Whole-Transcriptome profiling of formalin-fixed, paraffin-embedded renal cell carcinoma by RNA-seq.
    Li P; Conley A; Zhang H; Kim HL
    BMC Genomics; 2014 Dec; 15(1):1087. PubMed ID: 25495041
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA.
    Haile S; Corbett RD; Bilobram S; Mungall K; Grande BM; Kirk H; Pandoh P; MacLeod T; McDonald H; Bala M; Coope RJ; Moore RA; Mungall AJ; Zhao Y; Morin RD; Jones SJ; Marra MA
    PLoS One; 2019; 14(10):e0224578. PubMed ID: 31671154
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evaluation of commercially available RNA amplification kits for RNA sequencing using very low input amounts of total RNA.
    Shanker S; Paulson A; Edenberg HJ; Peak A; Perera A; Alekseyev YO; Beckloff N; Bivens NJ; Donnelly R; Gillaspy AF; Grove D; Gu W; Jafari N; Kerley-Hamilton JS; Lyons RH; Tepper C; Nicolet CM
    J Biomol Tech; 2015 Apr; 26(1):4-18. PubMed ID: 25649271
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A comparison of sperm RNA-seq methods.
    Mao S; Sendler E; Goodrich RJ; Hauser R; Krawetz SA
    Syst Biol Reprod Med; 2014 Oct; 60(5):308-15. PubMed ID: 25077492
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol.
    Sun Z; Asmann YW; Nair A; Zhang Y; Wang L; Kalari KR; Bhagwate AV; Baker TR; Carr JM; Kocher JP; Perez EA; Thompson EA
    PLoS One; 2013; 8(8):e71745. PubMed ID: 23977132
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A benchmark of hemoglobin blocking during library preparation for mRNA-Sequencing of human blood samples.
    Uellendahl-Werth F; Wolfien M; Franke A; Wolkenhauer O; Ellinghaus D
    Sci Rep; 2020 Mar; 10(1):5630. PubMed ID: 32221409
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.