182 related articles for article (PubMed ID: 28584021)
1. The Landscape of Isoform Switches in Human Cancers.
Vitting-Seerup K; Sandelin A
Mol Cancer Res; 2017 Sep; 15(9):1206-1220. PubMed ID: 28584021
[TBL] [Abstract][Full Text] [Related]
2. Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching.
Rehrauer H; Opitz L; Tan G; Sieverling L; Schlapbach R
BMC Bioinformatics; 2013 Dec; 14():370. PubMed ID: 24365034
[TBL] [Abstract][Full Text] [Related]
3. Quantitative Analysis of Isoform Switching in Cancer.
Dolgalev G; Poverennaya E
Int J Mol Sci; 2023 Jun; 24(12):. PubMed ID: 37373214
[TBL] [Abstract][Full Text] [Related]
4. The landscape of isoform switches in sepsis: a multicenter cohort study.
Chen L; Chen K; Hong Y; Xing L; Zhang J; Zhang K; Zhang Z
Sci Rep; 2022 Jun; 12(1):10276. PubMed ID: 35715539
[TBL] [Abstract][Full Text] [Related]
5. Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network.
Kahraman A; Karakulak T; Szklarczyk D; von Mering C
Sci Rep; 2020 Sep; 10(1):14453. PubMed ID: 32879328
[TBL] [Abstract][Full Text] [Related]
6. ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer.
Yang IS; Son H; Kim S; Kim S
BMC Genomics; 2016 Aug; 17(1):631. PubMed ID: 27519173
[TBL] [Abstract][Full Text] [Related]
7. Aberrant DNA methylation defines isoform usage in cancer, with functional implications.
Chen YC; Elnitski L
PLoS Comput Biol; 2019 Jul; 15(7):e1007095. PubMed ID: 31329578
[TBL] [Abstract][Full Text] [Related]
8. Gene expression and isoform variation analysis using Affymetrix Exon Arrays.
Bemmo A; Benovoy D; Kwan T; Gaffney DJ; Jensen RV; Majewski J
BMC Genomics; 2008 Nov; 9():529. PubMed ID: 18990248
[TBL] [Abstract][Full Text] [Related]
9. IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences.
Vitting-Seerup K; Sandelin A
Bioinformatics; 2019 Nov; 35(21):4469-4471. PubMed ID: 30989184
[TBL] [Abstract][Full Text] [Related]
10. Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC.
Horie M; Kaczkowski B; Ohshima M; Matsuzaki H; Noguchi S; Mikami Y; Lizio M; Itoh M; Kawaji H; Lassmann T; Carninci P; Hayashizaki Y; Forrest ARR; Takai D; Yamaguchi Y; Micke P; Saito A; Nagase T
Mol Cancer Res; 2017 Oct; 15(10):1354-1365. PubMed ID: 28698358
[TBL] [Abstract][Full Text] [Related]
11. Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer.
Sebestyén E; Zawisza M; Eyras E
Nucleic Acids Res; 2015 Feb; 43(3):1345-56. PubMed ID: 25578962
[TBL] [Abstract][Full Text] [Related]
12. IUTA: a tool for effectively detecting differential isoform usage from RNA-Seq data.
Niu L; Huang W; Umbach DM; Li L
BMC Genomics; 2014 Oct; 15(1):862. PubMed ID: 25283306
[TBL] [Abstract][Full Text] [Related]
13. Differential transcript usage in the Parkinson's disease brain.
Dick F; Nido GS; Alves GW; Tysnes OB; Nilsen GH; Dölle C; Tzoulis C
PLoS Genet; 2020 Nov; 16(11):e1009182. PubMed ID: 33137089
[TBL] [Abstract][Full Text] [Related]
14. Identification of transcriptional isoforms associated with survival in cancer patient.
Tang Z; Chen T; Ren X; Zhang Z
J Genet Genomics; 2019 Sep; 46(9):413-421. PubMed ID: 31630971
[TBL] [Abstract][Full Text] [Related]
15. A Study of TP53 RNA Splicing Illustrates Pitfalls of RNA-seq Methodology.
Mehta S; Tsai P; Lasham A; Campbell H; Reddel R; Braithwaite A; Print C
Cancer Res; 2016 Dec; 76(24):7151-7159. PubMed ID: 27913434
[TBL] [Abstract][Full Text] [Related]
16. ELF5 isoform expression is tissue-specific and significantly altered in cancer.
Piggin CL; Roden DL; Gallego-Ortega D; Lee HJ; Oakes SR; Ormandy CJ
Breast Cancer Res; 2016 Jan; 18(1):4. PubMed ID: 26738740
[TBL] [Abstract][Full Text] [Related]
17. Using machine learning to detect the differential usage of novel gene isoforms.
Zhang X; Hassan MA; Prendergast JGD
BMC Bioinformatics; 2022 Jan; 23(1):45. PubMed ID: 35042461
[TBL] [Abstract][Full Text] [Related]
18. Studying Isoform-Specific mRNA Recruitment to Polyribosomes with Frac-seq.
Martinez-Nunez RT; Sanford JR
Methods Mol Biol; 2016; 1358():99-108. PubMed ID: 26463379
[TBL] [Abstract][Full Text] [Related]
19. IIIDB: a database for isoform-isoform interactions and isoform network modules.
Tseng YT; Li W; Chen CH; Zhang S; Chen JJ; Zhou X; Liu CC
BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S10. PubMed ID: 25707505
[TBL] [Abstract][Full Text] [Related]
20. Discovery of novel genes and gene isoforms by integrating transcriptomic and proteomic profiling from mouse liver.
Wu P; Zhang H; Lin W; Hao Y; Ren L; Zhang C; Li N; Wei H; Jiang Y; He F
J Proteome Res; 2014 May; 13(5):2409-19. PubMed ID: 24717071
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
