175 related articles for article (PubMed ID: 28623584)
1. DNase I SIM: A Simplified In-Nucleus Method for DNase I Hypersensitive Site Sequencing.
Filichkin SA; Megraw M
Methods Mol Biol; 2017; 1629():141-154. PubMed ID: 28623584
[TBL] [Abstract][Full Text] [Related]
2. Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana.
Cumbie JS; Filichkin SA; Megraw M
Plant Methods; 2015; 11():42. PubMed ID: 26339280
[TBL] [Abstract][Full Text] [Related]
3. Genome-scale mapping of DNase I hypersensitivity.
John S; Sabo PJ; Canfield TK; Lee K; Vong S; Weaver M; Wang H; Vierstra J; Reynolds AP; Thurman RE; Stamatoyannopoulos JA
Curr Protoc Mol Biol; 2013 Jul; Chapter 27():Unit 21.27. PubMed ID: 23821440
[TBL] [Abstract][Full Text] [Related]
4. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks.
Moyano TC; GutiƩrrez RA; Alvarez JM
Methods Mol Biol; 2021; 2328():25-46. PubMed ID: 34251618
[TBL] [Abstract][Full Text] [Related]
5. Genome-wide mapping of DNase I hypersensitive sites in plants.
Zhang W; Jiang J
Methods Mol Biol; 2015; 1284():71-89. PubMed ID: 25757768
[TBL] [Abstract][Full Text] [Related]
6. Genome-Wide Mapping of DNase I Hypersensitive Sites in Tomato.
Li R; Cui X
Methods Mol Biol; 2018; 1830():367-379. PubMed ID: 30043382
[TBL] [Abstract][Full Text] [Related]
7. Genome-wide mapping of DNase I hypersensitive sites in rare cell populations using single-cell DNase sequencing.
Cooper J; Ding Y; Song J; Zhao K
Nat Protoc; 2017 Nov; 12(11):2342-2354. PubMed ID: 29022941
[TBL] [Abstract][Full Text] [Related]
8. Genome-Wide Identification of DNase I Hypersensitive Sites in Plants.
Wang Y; Wang K
Curr Protoc; 2021 Jun; 1(6):e148. PubMed ID: 34101388
[TBL] [Abstract][Full Text] [Related]
9. Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin.
Kodama Y; Nagaya S; Shinmyo A; Kato K
Plant Cell Physiol; 2007 Mar; 48(3):459-70. PubMed ID: 17283013
[TBL] [Abstract][Full Text] [Related]
10. Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution.
Ma W; Ay F; Lee C; Gulsoy G; Deng X; Cook S; Hesson J; Cavanaugh C; Ware CB; Krumm A; Shendure J; Blau CA; Disteche CM; Noble WS; Duan Z
Methods; 2018 Jun; 142():59-73. PubMed ID: 29382556
[TBL] [Abstract][Full Text] [Related]
11. DNase I digestion of isolated nulcei for genome-wide mapping of DNase hypersensitivity sites in chromatin.
Ling G; Waxman DJ
Methods Mol Biol; 2013; 977():21-33. PubMed ID: 23436351
[TBL] [Abstract][Full Text] [Related]
12. Isolation of nuclei for use in genome-wide DNase hypersensitivity assays to probe chromatin structure.
Ling G; Waxman DJ
Methods Mol Biol; 2013; 977():13-9. PubMed ID: 23436350
[TBL] [Abstract][Full Text] [Related]
13. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).
Crawford GE; Holt IE; Whittle J; Webb BD; Tai D; Davis S; Margulies EH; Chen Y; Bernat JA; Ginsburg D; Zhou D; Luo S; Vasicek TJ; Daly MJ; Wolfsberg TG; Collins FS
Genome Res; 2006 Jan; 16(1):123-31. PubMed ID: 16344561
[TBL] [Abstract][Full Text] [Related]
14. Genome-Wide Identification of Regulatory DNA Elements in Crop Plants.
Li Z; Wang K
Methods Mol Biol; 2020; 2072():85-99. PubMed ID: 31541440
[TBL] [Abstract][Full Text] [Related]
15. Genome-wide discovery of active regulatory elements and transcription factor footprints in
Ho MCW; Quintero-Cadena P; Sternberg PW
Genome Res; 2017 Dec; 27(12):2108-2119. PubMed ID: 29074739
[TBL] [Abstract][Full Text] [Related]
16. Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.
Bajic M; Maher KA; Deal RB
Methods Mol Biol; 2018; 1675():183-201. PubMed ID: 29052193
[TBL] [Abstract][Full Text] [Related]
17. DNase-seq to Study Chromatin Accessibility in Early
Cho JS; Blitz IL; Cho KWY
Cold Spring Harb Protoc; 2019 Apr; 2019(4):pdb.prot098335. PubMed ID: 30131367
[TBL] [Abstract][Full Text] [Related]
18. Measuring Arabidopsis chromatin accessibility using DNase I-polymerase chain reaction and DNase I-chip assays.
Shu H; Gruissem W; Hennig L
Plant Physiol; 2013 Aug; 162(4):1794-801. PubMed ID: 23739687
[TBL] [Abstract][Full Text] [Related]
19. Genome-wide identification of regulatory DNA elements and protein-binding footprints using signatures of open chromatin in Arabidopsis.
Zhang W; Zhang T; Wu Y; Jiang J
Plant Cell; 2012 Jul; 24(7):2719-31. PubMed ID: 22773751
[TBL] [Abstract][Full Text] [Related]
20. Chromatin Immunoprecipitation Sequencing (ChIP-Seq) for Transcription Factors and Chromatin Factors in Arabidopsis thaliana Roots: From Material Collection to Data Analysis.
Cortijo S; Charoensawan V; Roudier F; Wigge PA
Methods Mol Biol; 2018; 1761():231-248. PubMed ID: 29525962
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]