These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

222 related articles for article (PubMed ID: 28633438)

  • 1. SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria.
    Chevrette MG; Aicheler F; Kohlbacher O; Currie CR; Medema MH
    Bioinformatics; 2017 Oct; 33(20):3202-3210. PubMed ID: 28633438
    [TBL] [Abstract][Full Text] [Related]  

  • 2. antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification.
    Blin K; Wolf T; Chevrette MG; Lu X; Schwalen CJ; Kautsar SA; Suarez Duran HG; de Los Santos ELC; Kim HU; Nave M; Dickschat JS; Mitchell DA; Shelest E; Breitling R; Takano E; Lee SY; Weber T; Medema MH
    Nucleic Acids Res; 2017 Jul; 45(W1):W36-W41. PubMed ID: 28460038
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A proteomic survey of nonribosomal peptide and polyketide biosynthesis in actinobacteria.
    Chen Y; Ntai I; Ju KS; Unger M; Zamdborg L; Robinson SJ; Doroghazi JR; Labeda DP; Metcalf WW; Kelleher NL
    J Proteome Res; 2012 Jan; 11(1):85-94. PubMed ID: 21978092
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identification of Sare0718 as an alanine-activating adenylation domain in marine actinomycete Salinispora arenicola CNS-205.
    Xia S; Ma Y; Zhang W; Yang Y; Wu S; Zhu M; Deng L; Li B; Liu Z; Qi C
    PLoS One; 2012; 7(5):e37487. PubMed ID: 22655051
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bioinformatics Tools for the Discovery of New Nonribosomal Peptides.
    Leclère V; Weber T; Jacques P; Pupin M
    Methods Mol Biol; 2016; 1401():209-32. PubMed ID: 26831711
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Alignment-Free Methods for the Detection and Specificity Prediction of Adenylation Domains.
    Agüero-Chapin G; Pérez-Machado G; Sánchez-Rodríguez A; Santos MM; Antunes A
    Methods Mol Biol; 2016; 1401():253-72. PubMed ID: 26831713
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computational discovery of specificity-conferring sites in non-ribosomal peptide synthetases.
    Knudsen M; Søndergaard D; Tofting-Olesen C; Hansen FT; Brodersen DE; Pedersen CN
    Bioinformatics; 2016 Feb; 32(3):325-9. PubMed ID: 26471456
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs).
    Rausch C; Weber T; Kohlbacher O; Wohlleben W; Huson DH
    Nucleic Acids Res; 2005; 33(18):5799-808. PubMed ID: 16221976
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Dereplication and de novo sequencing of nonribosomal peptides.
    Ng J; Bandeira N; Liu WT; Ghassemian M; Simmons TL; Gerwick WH; Linington R; Dorrestein PC; Pevzner PA
    Nat Methods; 2009 Aug; 6(8):596-9. PubMed ID: 19597502
    [TBL] [Abstract][Full Text] [Related]  

  • 10. NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases.
    Ansari MZ; Yadav G; Gokhale RS; Mohanty D
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W405-13. PubMed ID: 15215420
    [TBL] [Abstract][Full Text] [Related]  

  • 11. AdenPredictor: accurate prediction of the adenylation domain specificity of nonribosomal peptide biosynthetic gene clusters in microbial genomes.
    Mongia M; Baral R; Adduri A; Yan D; Liu Y; Bian Y; Kim P; Behsaz B; Mohimani H
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i40-i46. PubMed ID: 37387149
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genome-based survey of nonribosomal peptide synthetase and polyketide synthase gene clusters in type strains of the genus Microtetraspora.
    Komaki H; Ichikawa N; Tamura T; Oguchi A; Hamada M; Fujita N
    J Antibiot (Tokyo); 2016 Sep; 69(9):712-8. PubMed ID: 26883394
    [No Abstract]   [Full Text] [Related]  

  • 13. A machine learning-based method for prediction of macrocyclization patterns of polyketides and non-ribosomal peptides.
    Agrawal P; Mohanty D
    Bioinformatics; 2021 May; 37(5):603-611. PubMed ID: 33010151
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Isolation and diversity of natural product biosynthetic genes of cultivable bacteria associated with marine sponge Mycale sp. from the coast of Fujian, China.
    Su P; Wang DX; Ding SX; Zhao J
    Can J Microbiol; 2014 Apr; 60(4):217-25. PubMed ID: 24693980
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Prediction of the substrate for nonribosomal peptide synthetase (NRPS) adenylation domains by virtual screening.
    Lee TV; Johnson RD; Arcus VL; Lott JS
    Proteins; 2015 Nov; 83(11):2052-66. PubMed ID: 26358936
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Biosynthesis of isonitrile lipopeptides by conserved nonribosomal peptide synthetase gene clusters in Actinobacteria.
    Harris NC; Sato M; Herman NA; Twigg F; Cai W; Liu J; Zhu X; Downey J; Khalaf R; Martin J; Koshino H; Zhang W
    Proc Natl Acad Sci U S A; 2017 Jul; 114(27):7025-7030. PubMed ID: 28634299
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bioinformatic Analysis Reveals both Oversampled and Underexplored Biosynthetic Diversity in Nonribosomal Peptides.
    Jian BS; Chiou SL; Hsu CC; Ho J; Wu YW; Chu J
    ACS Chem Biol; 2023 Mar; 18(3):476-483. PubMed ID: 36820820
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The biosynthetic gene cluster for the antitumor drug bleomycin from Streptomyces verticillus ATCC15003 supporting functional interactions between nonribosomal peptide synthetases and a polyketide synthase.
    Du L; Sánchez C; Chen M; Edwards DJ; Shen B
    Chem Biol; 2000 Aug; 7(8):623-42. PubMed ID: 11048953
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Chemical Strategies for Visualizing and Analyzing Endogenous Nonribosomal Peptide Synthetase (NRPS) Megasynthetases.
    Ishikawa F; Tanabe G
    Chembiochem; 2019 Aug; 20(16):2032-2040. PubMed ID: 31134733
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Refining and expanding nonribosomal peptide synthetase function and mechanism.
    McErlean M; Overbay J; Van Lanen S
    J Ind Microbiol Biotechnol; 2019 Mar; 46(3-4):493-513. PubMed ID: 30673909
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.