These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

146 related articles for article (PubMed ID: 28636386)

  • 1. MsViz: A Graphical Software Tool for In-Depth Manual Validation and Quantitation of Post-translational Modifications.
    Martín-Campos T; Mylonas R; Masselot A; Waridel P; Petricevic T; Xenarios I; Quadroni M
    J Proteome Res; 2017 Aug; 16(8):3092-3101. PubMed ID: 28636386
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MODi: a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra.
    Kim S; Na S; Sim JW; Park H; Jeong J; Kim H; Seo Y; Seo J; Lee KJ; Paek E
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W258-63. PubMed ID: 16845006
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications.
    Chaudhuri R; Sadrieh A; Hoffman NJ; Parker BL; Humphrey SJ; Stöckli J; Hill AP; James DE; Yang JY
    BMC Genomics; 2015 Aug; 16(1):617. PubMed ID: 26283093
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Post-translational quantitation by SRM/MRM: applications in cardiology.
    Gianazza E; Banfi C
    Expert Rev Proteomics; 2018 Jun; 15(6):477-502. PubMed ID: 29865883
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation.
    Schilling B; Rardin MJ; MacLean BX; Zawadzka AM; Frewen BE; Cusack MP; Sorensen DJ; Bereman MS; Jing E; Wu CC; Verdin E; Kahn CR; Maccoss MJ; Gibson BW
    Mol Cell Proteomics; 2012 May; 11(5):202-14. PubMed ID: 22454539
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Existing bioinformatics tools for the quantitation of post-translational modifications.
    Allmer J
    Amino Acids; 2012 Jan; 42(1):129-38. PubMed ID: 20473535
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prophossi: automating expert validation of phosphopeptide-spectrum matches from tandem mass spectrometry.
    Martin DM; Nett IR; Vandermoere F; Barber JD; Morrice NA; Ferguson MA
    Bioinformatics; 2010 Sep; 26(17):2153-9. PubMed ID: 20651112
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Software eyes for protein post-translational modifications.
    Na S; Paek E
    Mass Spectrom Rev; 2015; 34(2):133-47. PubMed ID: 24889695
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MASH Suite Pro: A Comprehensive Software Tool for Top-Down Proteomics.
    Cai W; Guner H; Gregorich ZR; Chen AJ; Ayaz-Guner S; Peng Y; Valeja SG; Liu X; Ge Y
    Mol Cell Proteomics; 2016 Feb; 15(2):703-14. PubMed ID: 26598644
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mining Large Scale Tandem Mass Spectrometry Data for Protein Modifications Using Spectral Libraries.
    Horlacher O; Lisacek F; Müller M
    J Proteome Res; 2016 Mar; 15(3):721-31. PubMed ID: 26653734
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Isobaric Tandem Mass Tag Multiplexed Post-Translational Modification Quantitation of Biopharmaceuticals by Targeted High-Resolution Mass Spectrometry.
    Mao Y; Kleinberg A; Li N
    Anal Chem; 2020 Jul; 92(14):9682-9690. PubMed ID: 32559367
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An accurate and efficient algorithm for Peptide and ptm identification by tandem mass spectrometry.
    Ning K; Ng HK; Leong HW
    Genome Inform; 2007; 19():119-30. PubMed ID: 18546510
    [TBL] [Abstract][Full Text] [Related]  

  • 13. STRAP PTM: Software Tool for Rapid Annotation and Differential Comparison of Protein Post-Translational Modifications.
    Spencer JL; Bhatia VN; Whelan SA; Costello CE; McComb ME
    Curr Protoc Bioinformatics; 2013 Dec; 44(1322):13.22.1-36. PubMed ID: 25422678
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra.
    Kertész-Farkas A; Reiz B; Vera R; Myers MP; Pongor S
    Bioinformatics; 2014 Jan; 30(2):234-41. PubMed ID: 24215026
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses.
    Slysz GW; Baker CA; Bozsa BM; Dang A; Percy AJ; Bennett M; Schriemer DC
    BMC Bioinformatics; 2009 May; 10():162. PubMed ID: 19473537
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Cross-Species PTM Mapping from Phosphoproteomic Data.
    Chaudhuri R; Yang JY
    Methods Mol Biol; 2017; 1558():459-469. PubMed ID: 28150252
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PTMSearchPlus: software tool for automated protein identification and post-translational modification characterization by integrating accurate intact protein mass and bottom-up mass spectrometric data searches.
    Kertesz V; Connelly HM; Erickson BK; Hettich RL
    Anal Chem; 2009 Oct; 81(20):8387-95. PubMed ID: 19775152
    [TBL] [Abstract][Full Text] [Related]  

  • 18. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 19. LuciPHOr2: site localization of generic post-translational modifications from tandem mass spectrometry data.
    Fermin D; Avtonomov D; Choi H; Nesvizhskii AI
    Bioinformatics; 2015 Apr; 31(7):1141-3. PubMed ID: 25429062
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PTM MarkerFinder, a software tool to detect and validate spectra from peptides carrying post-translational modifications.
    Nanni P; Panse C; Gehrig P; Mueller S; Grossmann J; Schlapbach R
    Proteomics; 2013 Aug; 13(15):2251-5. PubMed ID: 23713006
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.