456 related articles for article (PubMed ID: 28636906)
21. Deep Learning for Validating and Estimating Resolution of Cryo-Electron Microscopy Density Maps
Avramov TK; Vyenielo D; Gomez-Blanco J; Adinarayanan S; Vargas J; Si D
Molecules; 2019 Mar; 24(6):. PubMed ID: 30917528
[TBL] [Abstract][Full Text] [Related]
22. Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.
Tama F; Miyashita O; Brooks CL
J Struct Biol; 2004 Sep; 147(3):315-26. PubMed ID: 15450300
[TBL] [Abstract][Full Text] [Related]
23. BCL::EM-Fit: rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement.
Woetzel N; Lindert S; Stewart PL; Meiler J
J Struct Biol; 2011 Sep; 175(3):264-76. PubMed ID: 21565271
[TBL] [Abstract][Full Text] [Related]
24. The accuracy of protein models automatically built into cryo-EM maps with ARP/wARP.
Chojnowski G; Sobolev E; Heuser P; Lamzin VS
Acta Crystallogr D Struct Biol; 2021 Feb; 77(Pt 2):142-150. PubMed ID: 33559604
[TBL] [Abstract][Full Text] [Related]
25. Tools for the cryo-EM gold rush: going from the cryo-EM map to the atomistic model.
Kim DN; Sanbonmatsu KY
Biosci Rep; 2017 Dec; 37(6):. PubMed ID: 28963369
[TBL] [Abstract][Full Text] [Related]
26. Protein Structural Modeling for Electron Microscopy Maps Using VESPER and MAINMAST.
Alnabati E; Terashi G; Kihara D
Curr Protoc; 2022 Jul; 2(7):e494. PubMed ID: 35849043
[TBL] [Abstract][Full Text] [Related]
27. Numerical geometry of map and model assessment.
Wriggers W; He J
J Struct Biol; 2015 Nov; 192(2):255-61. PubMed ID: 26416532
[TBL] [Abstract][Full Text] [Related]
28. Advances in Structure Modeling Methods for Cryo-Electron Microscopy Maps.
Alnabati E; Kihara D
Molecules; 2019 Dec; 25(1):. PubMed ID: 31878333
[TBL] [Abstract][Full Text] [Related]
29. Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography.
Trabuco LG; Villa E; Schreiner E; Harrison CB; Schulten K
Methods; 2009 Oct; 49(2):174-80. PubMed ID: 19398010
[TBL] [Abstract][Full Text] [Related]
30. CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neural networks.
Zhang X; Zhang B; Freddolino PL; Zhang Y
Nat Methods; 2022 Feb; 19(2):195-204. PubMed ID: 35132244
[TBL] [Abstract][Full Text] [Related]
31. Cryo2StructData: A Large Labeled Cryo-EM Density Map Dataset for AI-based Modeling of Protein Structures.
Giri N; Wang L; Cheng J
Sci Data; 2024 May; 11(1):458. PubMed ID: 38710720
[TBL] [Abstract][Full Text] [Related]
32. Computational methods for constructing protein structure models from 3D electron microscopy maps.
Esquivel-Rodríguez J; Kihara D
J Struct Biol; 2013 Oct; 184(1):93-102. PubMed ID: 23796504
[TBL] [Abstract][Full Text] [Related]
33. Cryo_fit: Democratization of flexible fitting for cryo-EM.
Kim DN; Moriarty NW; Kirmizialtin S; Afonine PV; Poon B; Sobolev OV; Adams PD; Sanbonmatsu K
J Struct Biol; 2019 Oct; 208(1):1-6. PubMed ID: 31279069
[TBL] [Abstract][Full Text] [Related]
34. Modeling Beta-Traces for Beta-Barrels from Cryo-EM Density Maps.
Si D; He J
Biomed Res Int; 2017; 2017():1793213. PubMed ID: 28164115
[TBL] [Abstract][Full Text] [Related]
35. Analyses of subnanometer resolution cryo-EM density maps.
Baker ML; Baker MR; Hryc CF; Dimaio F
Methods Enzymol; 2010; 483():1-29. PubMed ID: 20888467
[TBL] [Abstract][Full Text] [Related]
36. Automated Modeling and Validation of Protein Complexes in Cryo-EM Maps.
Cragnolini T; Sweeney A; Topf M
Methods Mol Biol; 2021; 2215():189-223. PubMed ID: 33368005
[TBL] [Abstract][Full Text] [Related]
37. Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps.
Pandurangan AP; Topf M
J Struct Biol; 2012 Feb; 177(2):520-31. PubMed ID: 22079400
[TBL] [Abstract][Full Text] [Related]
38. Comparison of an Atomic Model and Its Cryo-EM Image at the Central Axis of a Helix.
He J; Zeil S; Hallak H; McKaig K; Kovacs J; Wriggers W
Proceedings (IEEE Int Conf Bioinformatics Biomed); 2015 Nov; 2015():1253-1259. PubMed ID: 27280059
[TBL] [Abstract][Full Text] [Related]
39. Cryo-electron microscopy modeling by the molecular dynamics flexible fitting method.
Chan KY; Trabuco LG; Schreiner E; Schulten K
Biopolymers; 2012 Sep; 97(9):678-86. PubMed ID: 22696404
[TBL] [Abstract][Full Text] [Related]
40. Refinement of Atomic Structures Against cryo-EM Maps.
Murshudov GN
Methods Enzymol; 2016; 579():277-305. PubMed ID: 27572731
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]