BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

397 related articles for article (PubMed ID: 28637243)

  • 1. Nanopore sequencing data analysis: state of the art, applications and challenges.
    Magi A; Semeraro R; Mingrino A; Giusti B; D'Aurizio R
    Brief Bioinform; 2018 Nov; 19(6):1256-1272. PubMed ID: 28637243
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
    Cherukuri Y; Janga SC
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
    [TBL] [Abstract][Full Text] [Related]  

  • 3. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
    Istace B; Friedrich A; d'Agata L; Faye S; Payen E; Beluche O; Caradec C; Davidas S; Cruaud C; Liti G; Lemainque A; Engelen S; Wincker P; Schacherer J; Aury JM
    Gigascience; 2017 Feb; 6(2):1-13. PubMed ID: 28369459
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Characterization of MinION nanopore data for resequencing analyses.
    Magi A; Giusti B; Tattini L
    Brief Bioinform; 2017 Nov; 18(6):940-953. PubMed ID: 27559152
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Oxford Nanopore MinION Sequencing and Genome Assembly.
    Lu H; Giordano F; Ning Z
    Genomics Proteomics Bioinformatics; 2016 Oct; 14(5):265-279. PubMed ID: 27646134
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Genome assembly using Nanopore-guided long and error-free DNA reads.
    Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
    BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ECNano: A cost-effective workflow for target enrichment sequencing and accurate variant calling on 4800 clinically significant genes using a single MinION flowcell.
    Leung AW; Leung HC; Wong CL; Zheng ZX; Lui WW; Luk HM; Lo IF; Luo R; Lam TW
    BMC Med Genomics; 2022 Mar; 15(1):43. PubMed ID: 35246132
    [TBL] [Abstract][Full Text] [Related]  

  • 8. High precision genome sequencing of engineered Gluconobacter oxydans 621H by combining long nanopore and short accurate Illumina reads.
    Kranz A; Vogel A; Degner U; Kiefler I; Bott M; Usadel B; Polen T
    J Biotechnol; 2017 Sep; 258():197-205. PubMed ID: 28433722
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Forensic nanopore sequencing of microhaplotype markers using QitanTech's QNome.
    Wang Z; Qin L; Liu J; Jiang L; Zou X; Chen X; Song F; Dai H; Hou Y
    Forensic Sci Int Genet; 2022 Mar; 57():102657. PubMed ID: 34973558
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assessing the performance of the Oxford Nanopore Technologies MinION.
    Laver T; Harrison J; O'Neill PA; Moore K; Farbos A; Paszkiewicz K; Studholme DJ
    Biomol Detect Quantif; 2015 Mar; 3():1-8. PubMed ID: 26753127
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias.
    Krishnakumar R; Sinha A; Bird SW; Jayamohan H; Edwards HS; Schoeniger JS; Patel KD; Branda SS; Bartsch MS
    Sci Rep; 2018 Feb; 8(1):3159. PubMed ID: 29453452
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants.
    Riaz N; Leung P; Barton K; Smith MA; Carswell S; Bull R; Lloyd AR; Rodrigo C
    BMC Genomics; 2021 Mar; 22(1):148. PubMed ID: 33653280
    [TBL] [Abstract][Full Text] [Related]  

  • 13. De novo sequencing and variant calling with nanopores using PoreSeq.
    Szalay T; Golovchenko JA
    Nat Biotechnol; 2015 Oct; 33(10):1087-91. PubMed ID: 26352647
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Approaches to Whole Mitochondrial Genome Sequencing on the Oxford Nanopore MinION.
    Zascavage RR; Hall CL; Thorson K; Mahmoud M; Sedlazeck FJ; Planz JV
    Curr Protoc Hum Genet; 2019 Dec; 104(1):e94. PubMed ID: 31743587
    [TBL] [Abstract][Full Text] [Related]  

  • 15. NanoDJ: a Dockerized Jupyter notebook for interactive Oxford Nanopore MinION sequence manipulation and genome assembly.
    Rodríguez-Pérez H; Hernández-Beeftink T; Lorenzo-Salazar JM; Roda-García JL; Pérez-González CJ; Colebrook M; Flores C
    BMC Bioinformatics; 2019 May; 20(1):234. PubMed ID: 31072312
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mapping and phasing of structural variation in patient genomes using nanopore sequencing.
    Cretu Stancu M; van Roosmalen MJ; Renkens I; Nieboer MM; Middelkamp S; de Ligt J; Pregno G; Giachino D; Mandrile G; Espejo Valle-Inclan J; Korzelius J; de Bruijn E; Cuppen E; Talkowski ME; Marschall T; de Ridder J; Kloosterman WP
    Nat Commun; 2017 Nov; 8(1):1326. PubMed ID: 29109544
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.
    Goodwin S; Gurtowski J; Ethe-Sayers S; Deshpande P; Schatz MC; McCombie WR
    Genome Res; 2015 Nov; 25(11):1750-6. PubMed ID: 26447147
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Full-Length HLA Class I Genotyping with the MinION Nanopore Sequencer.
    Lang K; Surendranath V; Quenzel P; Schöfl G; Schmidt AH; Lange V
    Methods Mol Biol; 2018; 1802():155-162. PubMed ID: 29858807
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Increasing the accuracy of nanopore DNA sequencing using a time-varying cross membrane voltage.
    Noakes MT; Brinkerhoff H; Laszlo AH; Derrington IM; Langford KW; Mount JW; Bowman JL; Baker KS; Doering KM; Tickman BI; Gundlach JH
    Nat Biotechnol; 2019 Jun; 37(6):651-656. PubMed ID: 31011178
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A world of opportunities with nanopore sequencing.
    Leggett RM; Clark MD
    J Exp Bot; 2017 Nov; 68(20):5419-5429. PubMed ID: 28992056
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.