157 related articles for article (PubMed ID: 28637296)
1. omiXcore: a web server for prediction of protein interactions with large RNA.
Armaos A; Cirillo D; Gaetano Tartaglia G
Bioinformatics; 2017 Oct; 33(19):3104-3106. PubMed ID: 28637296
[TBL] [Abstract][Full Text] [Related]
2. catRAPID omics: a web server for large-scale prediction of protein-RNA interactions.
Agostini F; Zanzoni A; Klus P; Marchese D; Cirillo D; Tartaglia GG
Bioinformatics; 2013 Nov; 29(22):2928-30. PubMed ID: 23975767
[TBL] [Abstract][Full Text] [Related]
3. catRAPID omics v2.0: going deeper and wider in the prediction of protein-RNA interactions.
Armaos A; Colantoni A; Proietti G; Rupert J; Tartaglia GG
Nucleic Acids Res; 2021 Jul; 49(W1):W72-W79. PubMed ID: 34086933
[TBL] [Abstract][Full Text] [Related]
4. ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli.
Agostini F; Cirillo D; Livi CM; Delli Ponti R; Tartaglia GG
Bioinformatics; 2014 Oct; 30(20):2975-7. PubMed ID: 24990610
[TBL] [Abstract][Full Text] [Related]
5. catRAPID signature: identification of ribonucleoproteins and RNA-binding regions.
Livi CM; Klus P; Delli Ponti R; Tartaglia GG
Bioinformatics; 2016 Mar; 32(5):773-5. PubMed ID: 26520853
[TBL] [Abstract][Full Text] [Related]
6. CROSSalive: a web server for predicting the in vivo structure of RNA molecules.
Ponti RD; Armaos A; Vandelli A; Tartaglia GG
Bioinformatics; 2020 Feb; 36(3):940-941. PubMed ID: 31504168
[TBL] [Abstract][Full Text] [Related]
7. Identification of protein-interacting nucleotides in a RNA sequence using composition profile of tri-nucleotides.
Panwar B; Raghava GP
Genomics; 2015 Apr; 105(4):197-203. PubMed ID: 25640448
[TBL] [Abstract][Full Text] [Related]
8. PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences.
Murakami Y; Spriggs RV; Nakamura H; Jones S
Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W412-6. PubMed ID: 20507911
[TBL] [Abstract][Full Text] [Related]
9. RBPmap: a web server for mapping binding sites of RNA-binding proteins.
Paz I; Kosti I; Ares M; Cline M; Mandel-Gutfreund Y
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W361-7. PubMed ID: 24829458
[TBL] [Abstract][Full Text] [Related]
10. Prediction of dinucleotide-specific RNA-binding sites in proteins.
Fernandez M; Kumagai Y; Standley DM; Sarai A; Mizuguchi K; Ahmad S
BMC Bioinformatics; 2011; 12 Suppl 13(Suppl 13):S5. PubMed ID: 22373260
[TBL] [Abstract][Full Text] [Related]
11. RNAcommender: genome-wide recommendation of RNA-protein interactions.
Corrado G; Tebaldi T; Costa F; Frasconi P; Passerini A
Bioinformatics; 2016 Dec; 32(23):3627-3634. PubMed ID: 27503225
[TBL] [Abstract][Full Text] [Related]
12. Modeling Protein-Protein or Protein-DNA/RNA Complexes Using the HDOCK Webserver.
Yan Y; Huang SY
Methods Mol Biol; 2020; 2165():217-229. PubMed ID: 32621227
[TBL] [Abstract][Full Text] [Related]
13. 3dRPC: a web server for 3D RNA-protein structure prediction.
Huang Y; Li H; Xiao Y
Bioinformatics; 2018 Apr; 34(7):1238-1240. PubMed ID: 29186336
[TBL] [Abstract][Full Text] [Related]
14. SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences.
Agostini F; Cirillo D; Ponti RD; Tartaglia GG
BMC Genomics; 2014 Oct; 15(1):925. PubMed ID: 25341390
[TBL] [Abstract][Full Text] [Related]
15. PRBP: Prediction of RNA-Binding Proteins Using a Random Forest Algorithm Combined with an RNA-Binding Residue Predictor.
Ma X; Guo J; Xiao K; Sun X
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(6):1385-93. PubMed ID: 26671809
[TBL] [Abstract][Full Text] [Related]
16. Prediction of protein-RNA binding sites by a random forest method with combined features.
Liu ZP; Wu LY; Wang Y; Zhang XS; Chen L
Bioinformatics; 2010 Jul; 26(13):1616-22. PubMed ID: 20483814
[TBL] [Abstract][Full Text] [Related]
17. Protein function annotation from sequence: prediction of residues interacting with RNA.
Spriggs RV; Murakami Y; Nakamura H; Jones S
Bioinformatics; 2009 Jun; 25(12):1492-7. PubMed ID: 19389733
[TBL] [Abstract][Full Text] [Related]
18. Studying the co-evolution of protein families with the Mirrortree web server.
Ochoa D; Pazos F
Bioinformatics; 2010 May; 26(10):1370-1. PubMed ID: 20363731
[TBL] [Abstract][Full Text] [Related]
19. cpPredictor: a web server for template-based prediction of RNA secondary structure.
Jelínek J; Pánek J
Bioinformatics; 2019 Apr; 35(7):1231-1233. PubMed ID: 30169571
[TBL] [Abstract][Full Text] [Related]
20. Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature.
Ma X; Guo J; Wu J; Liu H; Yu J; Xie J; Sun X
Proteins; 2011 Apr; 79(4):1230-9. PubMed ID: 21268114
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
