138 related articles for article (PubMed ID: 28637301)
1. EDEN: evolutionary dynamics within environments.
Münch PC; Stecher B; McHardy AC
Bioinformatics; 2017 Oct; 33(20):3292-3295. PubMed ID: 28637301
[TBL] [Abstract][Full Text] [Related]
2. Snowball: strain aware gene assembly of metagenomes.
Gregor I; Schönhuth A; McHardy AC
Bioinformatics; 2016 Sep; 32(17):i649-i657. PubMed ID: 27587685
[TBL] [Abstract][Full Text] [Related]
3. CloudPhylo: a fast and scalable tool for phylogeny reconstruction.
Xu X; Ji Z; Zhang Z
Bioinformatics; 2017 Feb; 33(3):438-440. PubMed ID: 28172557
[TBL] [Abstract][Full Text] [Related]
4. Chordomics: a visualization tool for linking function to phylogeny in microbiomes.
McDonnell K; Waters N; Howley E; Abram F
Bioinformatics; 2020 Feb; 36(4):1309-1310. PubMed ID: 31539022
[TBL] [Abstract][Full Text] [Related]
5. CSSSCL: a python package that uses combined sequence similarity scores for accurate taxonomic classification of long and short sequence reads.
Borozan I; Ferretti V
Bioinformatics; 2016 Feb; 32(3):453-5. PubMed ID: 26454281
[TBL] [Abstract][Full Text] [Related]
6. SmashCommunity: a metagenomic annotation and analysis tool.
Arumugam M; Harrington ED; Foerstner KU; Raes J; Bork P
Bioinformatics; 2010 Dec; 26(23):2977-8. PubMed ID: 20959381
[TBL] [Abstract][Full Text] [Related]
7. TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler.
Morgan-Lang C; McLaughlin R; Armstrong Z; Zhang G; Chan K; Hallam SJ
Bioinformatics; 2020 Sep; 36(18):4706-4713. PubMed ID: 32637989
[TBL] [Abstract][Full Text] [Related]
8. FROGS: Find, Rapidly, OTUs with Galaxy Solution.
Escudié F; Auer L; Bernard M; Mariadassou M; Cauquil L; Vidal K; Maman S; Hernandez-Raquet G; Combes S; Pascal G
Bioinformatics; 2018 Apr; 34(8):1287-1294. PubMed ID: 29228191
[TBL] [Abstract][Full Text] [Related]
9. simurg: simulate bacterial pangenomes in R.
Ferrés I; Fresia P; Iraola G
Bioinformatics; 2020 Feb; 36(4):1273-1274. PubMed ID: 31584605
[TBL] [Abstract][Full Text] [Related]
10. Fizzy: feature subset selection for metagenomics.
Ditzler G; Morrison JC; Lan Y; Rosen GL
BMC Bioinformatics; 2015 Nov; 16():358. PubMed ID: 26538306
[TBL] [Abstract][Full Text] [Related]
11. PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization.
Kreft L; Botzki A; Coppens F; Vandepoele K; Van Bel M
Bioinformatics; 2017 Sep; 33(18):2946-2947. PubMed ID: 28525531
[TBL] [Abstract][Full Text] [Related]
12. Abundance estimation and differential testing on strain level in metagenomics data.
Fischer M; Strauch B; Renard BY
Bioinformatics; 2017 Jul; 33(14):i124-i132. PubMed ID: 28881972
[TBL] [Abstract][Full Text] [Related]
13. SSuMMo: rapid analysis, comparison and visualization of microbial communities.
Leach AL; Chong JP; Redeker KR
Bioinformatics; 2012 Mar; 28(5):679-86. PubMed ID: 22238261
[TBL] [Abstract][Full Text] [Related]
14. METAREP: JCVI metagenomics reports--an open source tool for high-performance comparative metagenomics.
Goll J; Rusch DB; Tanenbaum DM; Thiagarajan M; Li K; Methé BA; Yooseph S
Bioinformatics; 2010 Oct; 26(20):2631-2. PubMed ID: 20798169
[TBL] [Abstract][Full Text] [Related]
15. MulRF: a software package for phylogenetic analysis using multi-copy gene trees.
Chaudhary R; Fernández-Baca D; Burleigh JG
Bioinformatics; 2015 Feb; 31(3):432-3. PubMed ID: 25273112
[TBL] [Abstract][Full Text] [Related]
16. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
Lu YY; Chen T; Fuhrman JA; Sun F
Bioinformatics; 2017 Mar; 33(6):791-798. PubMed ID: 27256312
[TBL] [Abstract][Full Text] [Related]
17. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.
Aßhauer KP; Wemheuer B; Daniel R; Meinicke P
Bioinformatics; 2015 Sep; 31(17):2882-4. PubMed ID: 25957349
[TBL] [Abstract][Full Text] [Related]
18. PanFP: pangenome-based functional profiles for microbial communities.
Jun SR; Robeson MS; Hauser LJ; Schadt CW; Gorin AA
BMC Res Notes; 2015 Sep; 8():479. PubMed ID: 26409790
[TBL] [Abstract][Full Text] [Related]
19. MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions.
Wang TY; Su CH; Tsai HK
Bioinformatics; 2011 Dec; 27(24):3341-7. PubMed ID: 22016405
[TBL] [Abstract][Full Text] [Related]
20. WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs.
Galiez C; Siebert M; Enault F; Vincent J; Söding J
Bioinformatics; 2017 Oct; 33(19):3113-3114. PubMed ID: 28957499
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]