388 related articles for article (PubMed ID: 28639162)
1. Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review.
Tagini F; Greub G
Eur J Clin Microbiol Infect Dis; 2017 Nov; 36(11):2007-2020. PubMed ID: 28639162
[TBL] [Abstract][Full Text] [Related]
2. Proficiency testing for bacterial whole genome sequencing in assuring the quality of microbiology diagnostics in clinical and public health laboratories.
Lau KA; Gonçalves da Silva A; Theis T; Gray J; Ballard SA; Rawlinson WD
Pathology; 2021 Dec; 53(7):902-911. PubMed ID: 34274166
[TBL] [Abstract][Full Text] [Related]
3. Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe.
Aanensen DM; Feil EJ; Holden MT; Dordel J; Yeats CA; Fedosejev A; Goater R; Castillo-Ramírez S; Corander J; Colijn C; Chlebowicz MA; Schouls L; Heck M; Pluister G; Ruimy R; Kahlmeter G; Åhman J; Matuschek E; Friedrich AW; Parkhill J; Bentley SD; Spratt BG; Grundmann H;
mBio; 2016 May; 7(3):. PubMed ID: 27150362
[TBL] [Abstract][Full Text] [Related]
4. Bacterial Whole Genome Sequencing on the Illumina iSeq 100 for Clinical and Public Health Laboratories.
Bruzek S; Vestal G; Lasher A; Lima A; Silbert S
J Mol Diagn; 2020 Dec; 22(12):1419-1429. PubMed ID: 32961318
[TBL] [Abstract][Full Text] [Related]
5. Harmonization of whole-genome sequencing for outbreak surveillance of
Jamin C; De Koster S; van Koeveringe S; De Coninck D; Mensaert K; De Bruyne K; Perales Selva N; Lammens C; Goossens H; Hoebe C; Savelkoul P; van Alphen L
Microb Genom; 2021 Jul; 7(7):. PubMed ID: 34279213
[TBL] [Abstract][Full Text] [Related]
6. Outbreak investigation using high-throughput genome sequencing within a diagnostic microbiology laboratory.
Sherry NL; Porter JL; Seemann T; Watkins A; Stinear TP; Howden BP
J Clin Microbiol; 2013 May; 51(5):1396-401. PubMed ID: 23408689
[TBL] [Abstract][Full Text] [Related]
7. Effective Surveillance Using Multilocus Variable-Number Tandem-Repeat Analysis and Whole-Genome Sequencing for Enterohemorrhagic Escherichia coli O157.
Lee K; Izumiya H; Iyoda S; Ohnishi M
Appl Environ Microbiol; 2019 Sep; 85(17):. PubMed ID: 31227555
[TBL] [Abstract][Full Text] [Related]
8. Acinetobacter baumannii Genomic Sequence-Based Core Genome Multilocus Sequence Typing Using Ridom SeqSphere+ and Antimicrobial Susceptibility Prediction in ARESdb.
Fida M; Cunningham SA; Beisken S; Posch AE; Chia N; Jeraldo PR; Murphy MP; Zinsmaster NM; Patel R;
J Clin Microbiol; 2022 Aug; 60(8):e0053322. PubMed ID: 35862760
[TBL] [Abstract][Full Text] [Related]
9. Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology.
Reuter S; Ellington MJ; Cartwright EJ; Köser CU; Török ME; Gouliouris T; Harris SR; Brown NM; Holden MT; Quail M; Parkhill J; Smith GP; Bentley SD; Peacock SJ
JAMA Intern Med; 2013 Aug; 173(15):1397-404. PubMed ID: 23857503
[TBL] [Abstract][Full Text] [Related]
10. Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance.
Holmes A; Allison L; Ward M; Dallman TJ; Clark R; Fawkes A; Murphy L; Hanson M
J Clin Microbiol; 2015 Nov; 53(11):3565-73. PubMed ID: 26354815
[TBL] [Abstract][Full Text] [Related]
11. Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance.
Wagner GE; Dabernig-Heinz J; Lipp M; Cabal A; Simantzik J; Kohl M; Scheiber M; Lichtenegger S; Ehricht R; Leitner E; Ruppitsch W; Steinmetz I
J Clin Microbiol; 2023 Apr; 61(4):e0163122. PubMed ID: 36988494
[TBL] [Abstract][Full Text] [Related]
12. Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus.
Gonzalez-Escalona N; Jolley KA; Reed E; Martinez-Urtaza J
J Clin Microbiol; 2017 Jun; 55(6):1682-1697. PubMed ID: 28330888
[No Abstract] [Full Text] [Related]
13. Validation, Implementation, and Clinical Utility of Whole Genome Sequence-Based Bacterial Identification in the Clinical Microbiology Laboratory.
Price TK; Realegeno S; Mirasol R; Tsan A; Chandrasekaran S; Garner OB; Yang S
J Mol Diagn; 2021 Nov; 23(11):1468-1477. PubMed ID: 34384892
[TBL] [Abstract][Full Text] [Related]
14. The Evolution of Strain Typing in the Mycobacterium tuberculosis Complex.
Merker M; Kohl TA; Niemann S; Supply P
Adv Exp Med Biol; 2017; 1019():43-78. PubMed ID: 29116629
[TBL] [Abstract][Full Text] [Related]
15. Virulence and resistance genes profiles and clonal relationships of non-typhoidal food-borne Salmonella strains isolated in Tunisia by whole genome sequencing.
Ben Hassena A; Haendiges J; Zormati S; Guermazi S; Gdoura R; Gonzalez-Escalona N; Siala M
Int J Food Microbiol; 2021 Jan; 337():108941. PubMed ID: 33181420
[TBL] [Abstract][Full Text] [Related]
16. Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective.
Rumore J; Tschetter L; Kearney A; Kandar R; McCormick R; Walker M; Peterson CL; Reimer A; Nadon C
BMC Genomics; 2018 Dec; 19(1):870. PubMed ID: 30514209
[TBL] [Abstract][Full Text] [Related]
17. Validation and Implementation of Clinical Laboratory Improvements Act-Compliant Whole-Genome Sequencing in the Public Health Microbiology Laboratory.
Kozyreva VK; Truong CL; Greninger AL; Crandall J; Mukhopadhyay R; Chaturvedi V
J Clin Microbiol; 2017 Aug; 55(8):2502-2520. PubMed ID: 28592550
[TBL] [Abstract][Full Text] [Related]
18. Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples.
Hasman H; Saputra D; Sicheritz-Ponten T; Lund O; Svendsen CA; Frimodt-Møller N; Aarestrup FM
J Clin Microbiol; 2014 Jan; 52(1):139-46. PubMed ID: 24172157
[TBL] [Abstract][Full Text] [Related]
19. Practical issues in implementing whole-genome-sequencing in routine diagnostic microbiology.
Rossen JWA; Friedrich AW; Moran-Gilad J;
Clin Microbiol Infect; 2018 Apr; 24(4):355-360. PubMed ID: 29117578
[TBL] [Abstract][Full Text] [Related]
20. Validation of Whole-Genome Sequencing for Identification and Characterization of Shiga Toxin-Producing Escherichia coli To Produce Standardized Data To Enable Data Sharing.
Holmes A; Dallman TJ; Shabaan S; Hanson M; Allison L
J Clin Microbiol; 2018 Mar; 56(3):. PubMed ID: 29263202
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
