BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

279 related articles for article (PubMed ID: 28645144)

  • 1. Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation.
    Sharma V; Hiller M
    Nucleic Acids Res; 2017 Aug; 45(14):8369-8377. PubMed ID: 28645144
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation.
    Sharma V; Elghafari A; Hiller M
    Nucleic Acids Res; 2016 Jun; 44(11):e103. PubMed ID: 27016733
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CESAR 2.0 substantially improves speed and accuracy of comparative gene annotation.
    Sharma V; Schwede P; Hiller M
    Bioinformatics; 2017 Dec; 33(24):3985-3987. PubMed ID: 28961744
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Coding Exon-Structure Aware Realigner (CESAR): Utilizing Genome Alignments for Comparative Gene Annotation.
    Sharma V; Hiller M
    Methods Mol Biol; 2019; 1962():179-191. PubMed ID: 31020560
    [TBL] [Abstract][Full Text] [Related]  

  • 5. chainCleaner improves genome alignment specificity and sensitivity.
    Suarez HG; Langer BE; Ladde P; Hiller M
    Bioinformatics; 2017 Jun; 33(11):1596-1603. PubMed ID: 28108446
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A genome alignment of 120 mammals highlights ultraconserved element variability and placenta-associated enhancers.
    Hecker N; Hiller M
    Gigascience; 2020 Jan; 9(1):. PubMed ID: 31899510
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Vertebrate gene finding from multiple-species alignments using a two-level strategy.
    Carter D; Durbin R
    Genome Biol; 2006; 7 Suppl 1(Suppl 1):S6.1-12. PubMed ID: 16925840
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SeqTools: visual tools for manual analysis of sequence alignments.
    Barson G; Griffiths E
    BMC Res Notes; 2016 Jan; 9():39. PubMed ID: 26801397
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons.
    Margulies EH; Chen CW; Green ED
    Trends Genet; 2006 Apr; 22(4):187-93. PubMed ID: 16499991
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Multi-Genome Annotation with AUGUSTUS.
    Nachtweide S; Stanke M
    Methods Mol Biol; 2019; 1962():139-160. PubMed ID: 31020558
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparative Genome Annotation.
    Nachtweide S; Romoth L; Stanke M
    Methods Mol Biol; 2024; 2802():165-187. PubMed ID: 38819560
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GASS: genome structural annotation for Eukaryotes based on species similarity.
    Wang Y; Chen L; Song N; Lei X
    BMC Genomics; 2015 Mar; 16(1):150. PubMed ID: 25764973
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Automated whole-genome multiple alignment of rat, mouse, and human.
    Brudno M; Poliakov A; Salamov A; Cooper GM; Sidow A; Rubin EM; Solovyev V; Batzoglou S; Dubchak I
    Genome Res; 2004 Apr; 14(4):685-92. PubMed ID: 15060011
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Multiple whole-genome alignments without a reference organism.
    Dubchak I; Poliakov A; Kislyuk A; Brudno M
    Genome Res; 2009 Apr; 19(4):682-9. PubMed ID: 19176791
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Discovery of regulatory elements in vertebrates through comparative genomics.
    Prakash A; Tompa M
    Nat Biotechnol; 2005 Oct; 23(10):1249-56. PubMed ID: 16211068
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Simultaneous alignment of short reads against multiple genomes.
    Schneeberger K; Hagmann J; Ossowski S; Warthmann N; Gesing S; Kohlbacher O; Weigel D
    Genome Biol; 2009; 10(9):R98. PubMed ID: 19761611
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Phylogenomic resources at the UCSC Genome Browser.
    Rosenbloom K; Taylor J; Schaeffer S; Kent J; Haussler D; Miller W
    Methods Mol Biol; 2008; 422():133-44. PubMed ID: 18629665
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multiple whole genome alignments and novel biomedical applications at the VISTA portal.
    Brudno M; Poliakov A; Minovitsky S; Ratnere I; Dubchak I
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W669-74. PubMed ID: 17488840
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparison of RefSeq protein-coding regions in human and vertebrate genomes.
    Fong JH; Murphy TD; Pruitt KD
    BMC Genomics; 2013 Sep; 14():654. PubMed ID: 24063302
    [TBL] [Abstract][Full Text] [Related]  

  • 20. halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments.
    Krasheninnikova K; Diekhans M; Armstrong J; Dievskii A; Paten B; O'Brien S
    Gigascience; 2020 Jun; 9(6):. PubMed ID: 32463100
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.