These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

160 related articles for article (PubMed ID: 28645318)

  • 1. Detecting consistent patterns of directional adaptation using differential selection codon models.
    Parto S; Lartillot N
    BMC Evol Biol; 2017 Jun; 17(1):147. PubMed ID: 28645318
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detecting Adaptation in Protein-Coding Genes Using a Bayesian Site-Heterogeneous Mutation-Selection Codon Substitution Model.
    Rodrigue N; Lartillot N
    Mol Biol Evol; 2017 Jan; 34(1):204-214. PubMed ID: 27744408
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles.
    Rodrigue N; Philippe H; Lartillot N
    Proc Natl Acad Sci U S A; 2010 Mar; 107(10):4629-34. PubMed ID: 20176949
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Inferring Long-Term Effective Population Size with Mutation-Selection Models.
    Latrille T; Lanore V; Lartillot N
    Mol Biol Evol; 2021 Sep; 38(10):4573-4587. PubMed ID: 34191010
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A population genetics-phylogenetics approach to inferring natural selection in coding sequences.
    Wilson DJ; Hernandez RD; Andolfatto P; Przeworski M
    PLoS Genet; 2011 Dec; 7(12):e1002395. PubMed ID: 22144911
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1.
    Brumme ZL; Brumme CJ; Heckerman D; Korber BT; Daniels M; Carlson J; Kadie C; Bhattacharya T; Chui C; Szinger J; Mo T; Hogg RS; Montaner JS; Frahm N; Brander C; Walker BD; Harrigan PR
    PLoS Pathog; 2007 Jul; 3(7):e94. PubMed ID: 17616974
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Shifting Balance on a Static Mutation-Selection Landscape: A Novel Scenario of Positive Selection.
    Jones CT; Youssef N; Susko E; Bielawski JP
    Mol Biol Evol; 2017 Feb; 34(2):391-407. PubMed ID: 28110273
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution.
    Bielawski JP; Yang Z
    J Mol Evol; 2004 Jul; 59(1):121-32. PubMed ID: 15383915
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Inferring the number and position of changes in selective regime in a non-equilibrium mutation-selection framework.
    Ritchie AM; Stark TL; Liberles DA
    BMC Ecol Evol; 2021 Mar; 21(1):39. PubMed ID: 33691618
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Advantages of a mechanistic codon substitution model for evolutionary analysis of protein-coding sequences.
    Miyazawa S
    PLoS One; 2011; 6(12):e28892. PubMed ID: 22220197
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Bayesian estimation of positively selected sites.
    Huelsenbeck JP; Dyer KA
    J Mol Evol; 2004 Jun; 58(6):661-72. PubMed ID: 15461423
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale.
    Latrille T; Rodrigue N; Lartillot N
    Proc Natl Acad Sci U S A; 2023 Mar; 120(11):e2214977120. PubMed ID: 36897968
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Unlocking a signal of introgression from codons in Lachancea kluyveri using a mutation-selection model.
    Landerer C; O'Meara BC; Zaretzki R; Gilchrist MA
    BMC Evol Biol; 2020 Aug; 20(1):109. PubMed ID: 32842959
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A method for detecting positive selection at single amino acid sites.
    Suzuki Y; Gojobori T
    Mol Biol Evol; 1999 Oct; 16(10):1315-28. PubMed ID: 10563013
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A Codon Model for Associating Phenotypic Traits with Altered Selective Patterns of Sequence Evolution.
    Halabi K; Karin EL; Guéguen L; Mayrose I
    Syst Biol; 2021 Apr; 70(3):608-622. PubMed ID: 33252676
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A Bayesian Mutation-Selection Framework for Detecting Site-Specific Adaptive Evolution in Protein-Coding Genes.
    Rodrigue N; Latrille T; Lartillot N
    Mol Biol Evol; 2021 Mar; 38(3):1199-1208. PubMed ID: 33045094
    [TBL] [Abstract][Full Text] [Related]  

  • 17. New methods for detecting positive selection at single amino acid sites.
    Suzuki Y
    J Mol Evol; 2004 Jul; 59(1):11-9. PubMed ID: 15383903
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detecting non-coding selective pressure in coding regions.
    Chen H; Blanchette M
    BMC Evol Biol; 2007 Feb; 7 Suppl 1(Suppl 1):S9. PubMed ID: 17288582
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forces.
    Spielman SJ; Weaver S; Shank SD; Magalis BR; Li M; Kosakovsky Pond SL
    Methods Mol Biol; 2019; 1910():427-468. PubMed ID: 31278673
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A model of directional selection applied to the evolution of drug resistance in HIV-1.
    Seoighe C; Ketwaroo F; Pillay V; Scheffler K; Wood N; Duffet R; Zvelebil M; Martinson N; McIntyre J; Morris L; Hide W
    Mol Biol Evol; 2007 Apr; 24(4):1025-31. PubMed ID: 17272680
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.