300 related articles for article (PubMed ID: 28650462)
1. Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
Zhang F; Christiansen L; Thomas J; Pokholok D; Jackson R; Morrell N; Zhao Y; Wiley M; Welch E; Jaeger E; Granat A; Norberg SJ; Halpern A; C Rogert M; Ronaghi M; Shendure J; Gormley N; Gunderson KL; Steemers FJ
Nat Biotechnol; 2017 Sep; 35(9):852-857. PubMed ID: 28650462
[TBL] [Abstract][Full Text] [Related]
2. Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.
Chen Z; Pham L; Wu TC; Mo G; Xia Y; Chang PL; Porter D; Phan T; Che H; Tran H; Bansal V; Shaffer J; Belda-Ferre P; Humphrey G; Knight R; Pevzner P; Pham S; Wang Y; Lei M
Genome Res; 2020 Jun; 30(6):898-909. PubMed ID: 32540955
[TBL] [Abstract][Full Text] [Related]
3. A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.
Suk EK; Schulz S; Mentrup B; Huebsch T; Duitama J; Hoehe MR
Methods Mol Biol; 2017; 1551():223-269. PubMed ID: 28138850
[TBL] [Abstract][Full Text] [Related]
4. Contiguity-Preserving Transposition Sequencing (CPT-Seq) for Genome-Wide Haplotyping, Assembly, and Single-Cell ATAC-Seq.
Christiansen L; Amini S; Zhang F; Ronaghi M; Gunderson KL; Steemers FJ
Methods Mol Biol; 2017; 1551():207-221. PubMed ID: 28138849
[TBL] [Abstract][Full Text] [Related]
5. A Simple Cost-Effective Method for Whole-Genome Sequencing, Haplotyping, and Assembly.
Wang O; Cheng X; Drmanac R; Peters BA
Methods Mol Biol; 2023; 2590():101-125. PubMed ID: 36335495
[TBL] [Abstract][Full Text] [Related]
6. Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.
Wang O; Chin R; Cheng X; Wu MKY; Mao Q; Tang J; Sun Y; Anderson E; Lam HK; Chen D; Zhou Y; Wang L; Fan F; Zou Y; Xie Y; Zhang RY; Drmanac S; Nguyen D; Xu C; Villarosa C; Gablenz S; Barua N; Nguyen S; Tian W; Liu JS; Wang J; Liu X; Qi X; Chen A; Wang H; Dong Y; Zhang W; Alexeev A; Yang H; Wang J; Kristiansen K; Xu X; Drmanac R; Peters BA
Genome Res; 2019 May; 29(5):798-808. PubMed ID: 30940689
[TBL] [Abstract][Full Text] [Related]
7. High throughput barcoding method for genome-scale phasing.
Redin D; Frick T; Aghelpasand H; Käller M; Borgström E; Olsen RA; Ahmadian A
Sci Rep; 2019 Dec; 9(1):18116. PubMed ID: 31792271
[TBL] [Abstract][Full Text] [Related]
8. Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.
Amini S; Pushkarev D; Christiansen L; Kostem E; Royce T; Turk C; Pignatelli N; Adey A; Kitzman JO; Vijayan K; Ronaghi M; Shendure J; Gunderson KL; Steemers FJ
Nat Genet; 2014 Dec; 46(12):1343-9. PubMed ID: 25326703
[TBL] [Abstract][Full Text] [Related]
9. Constructing DNA Barcode Sets Based on Particle Swarm Optimization.
Wang B; Zheng X; Zhou S; Zhou C; Wei X; Zhang Q; Wei Z
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):999-1002. PubMed ID: 28287980
[TBL] [Abstract][Full Text] [Related]
10. Low-Cost Genome-Scale Phasing with Barcode-Linked Sequencing.
Redin D
Methods Mol Biol; 2023; 2590():85-99. PubMed ID: 36335494
[TBL] [Abstract][Full Text] [Related]
11. Whole-genome haplotyping by dilution, amplification, and sequencing.
Kaper F; Swamy S; Klotzle B; Munchel S; Cottrell J; Bibikova M; Chuang HY; Kruglyak S; Ronaghi M; Eberle MA; Fan JB
Proc Natl Acad Sci U S A; 2013 Apr; 110(14):5552-7. PubMed ID: 23509297
[TBL] [Abstract][Full Text] [Related]
12. BLR: a flexible pipeline for haplotype analysis of multiple linked-read technologies.
Höjer P; Frick T; Siga H; Pourbozorgi P; Aghelpasand H; Martin M; Ahmadian A
Nucleic Acids Res; 2023 Dec; 51(22):e114. PubMed ID: 37941142
[TBL] [Abstract][Full Text] [Related]
13. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.
Zheng GX; Lau BT; Schnall-Levin M; Jarosz M; Bell JM; Hindson CM; Kyriazopoulou-Panagiotopoulou S; Masquelier DA; Merrill L; Terry JM; Mudivarti PA; Wyatt PW; Bharadwaj R; Makarewicz AJ; Li Y; Belgrader P; Price AD; Lowe AJ; Marks P; Vurens GM; Hardenbol P; Montesclaros L; Luo M; Greenfield L; Wong A; Birch DE; Short SW; Bjornson KP; Patel P; Hopmans ES; Wood C; Kaur S; Lockwood GK; Stafford D; Delaney JP; Wu I; Ordonez HS; Grimes SM; Greer S; Lee JY; Belhocine K; Giorda KM; Heaton WH; McDermott GP; Bent ZW; Meschi F; Kondov NO; Wilson R; Bernate JA; Gauby S; Kindwall A; Bermejo C; Fehr AN; Chan A; Saxonov S; Ness KD; Hindson BJ; Ji HP
Nat Biotechnol; 2016 Mar; 34(3):303-11. PubMed ID: 26829319
[TBL] [Abstract][Full Text] [Related]
14. Long Fragment Read (LFR) Technology: Cost-Effective, High-Quality Genome-Wide Molecular Haplotyping.
McElwain MA; Zhang RY; Drmanac R; Peters BA
Methods Mol Biol; 2017; 1551():191-205. PubMed ID: 28138848
[TBL] [Abstract][Full Text] [Related]
15. Droplet barcoding for massively parallel single-molecule deep sequencing.
Lan F; Haliburton JR; Yuan A; Abate AR
Nat Commun; 2016 Jun; 7():11784. PubMed ID: 27353563
[TBL] [Abstract][Full Text] [Related]
16. A hybrid approach for de novo human genome sequence assembly and phasing.
Mostovoy Y; Levy-Sakin M; Lam J; Lam ET; Hastie AR; Marks P; Lee J; Chu C; Lin C; Džakula Ž; Cao H; Schlebusch SA; Giorda K; Schnall-Levin M; Wall JD; Kwok PY
Nat Methods; 2016 Jul; 13(7):587-90. PubMed ID: 27159086
[TBL] [Abstract][Full Text] [Related]
17. Ultraaccurate genome sequencing and haplotyping of single human cells.
Chu WK; Edge P; Lee HS; Bansal V; Bafna V; Huang X; Zhang K
Proc Natl Acad Sci U S A; 2017 Nov; 114(47):12512-12517. PubMed ID: 29078313
[TBL] [Abstract][Full Text] [Related]
18. Droplet Barcode Sequencing for targeted linked-read haplotyping of single DNA molecules.
Redin D; Borgström E; He M; Aghelpasand H; Käller M; Ahmadian A
Nucleic Acids Res; 2017 Jul; 45(13):e125. PubMed ID: 28525570
[TBL] [Abstract][Full Text] [Related]
19. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
Bansal V
Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
[TBL] [Abstract][Full Text] [Related]
20. An Ultrahigh-throughput Microfluidic Platform for Single-cell Genome Sequencing.
Demaree B; Weisgerber D; Lan F; Abate AR
J Vis Exp; 2018 May; (135):. PubMed ID: 29889211
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
