These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

91 related articles for article (PubMed ID: 28659129)

  • 21. FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data.
    Shi Y; Majewski J
    Bioinformatics; 2013 Jun; 29(11):1461-2. PubMed ID: 23539306
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Allele-specific copy-number discovery from whole-genome and whole-exome sequencing.
    Wang W; Wang W; Sun W; Crowley JJ; Szatkiewicz JP
    Nucleic Acids Res; 2015 Aug; 43(14):e90. PubMed ID: 25883151
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A survey of copy-number variation detection tools based on high-throughput sequencing data.
    Xi R; Lee S; Park PJ
    Curr Protoc Hum Genet; 2012 Oct; Chapter 7():Unit7.19. PubMed ID: 23074071
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data.
    Alkodsi A; Louhimo R; Hautaniemi S
    Brief Bioinform; 2015 Mar; 16(2):242-54. PubMed ID: 24599115
    [TBL] [Abstract][Full Text] [Related]  

  • 25. TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing.
    Farris MH; Scott AR; Texter PA; Bartlett M; Coleman P; Masters D
    BMC Bioinformatics; 2018 Apr; 19(1):126. PubMed ID: 29642839
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A shifting level model algorithm that identifies aberrations in array-CGH data.
    Magi A; Benelli M; Marseglia G; Nannetti G; Scordo MR; Torricelli F
    Biostatistics; 2010 Apr; 11(2):265-80. PubMed ID: 19948744
    [TBL] [Abstract][Full Text] [Related]  

  • 27. biomvRhsmm: genomic segmentation with hidden semi-Markov model.
    Du Y; Murani E; Ponsuksili S; Wimmers K
    Biomed Res Int; 2014; 2014():910390. PubMed ID: 24995333
    [TBL] [Abstract][Full Text] [Related]  

  • 28. A web application for the unspecific detection of differentially expressed DNA regions in strand-specific expression data.
    Juanes JM; Miguel A; Morales LJ; Pérez-Ortín JE; Arnau V
    Bioinformatics; 2015 Oct; 31(19):3228-30. PubMed ID: 26040457
    [TBL] [Abstract][Full Text] [Related]  

  • 29. CNARA: reliability assessment for genomic copy number profiles.
    Ai N; Cai H; Solovan C; Baudis M
    BMC Genomics; 2016 Oct; 17(1):799. PubMed ID: 27733115
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Characterization and identification of hidden rare variants in the human genome.
    Magi A; D'Aurizio R; Palombo F; Cifola I; Tattini L; Semeraro R; Pippucci T; Giusti B; Romeo G; Abbate R; Gensini GF
    BMC Genomics; 2015 Apr; 16(1):340. PubMed ID: 25903059
    [TBL] [Abstract][Full Text] [Related]  

  • 31. An integrative framework for the identification of double minute chromosomes using next generation sequencing data.
    Hayes M; Li J
    BMC Genet; 2015; 16 Suppl 2(Suppl 2):S1. PubMed ID: 25953282
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome.
    Zhang J; Feuk L; Duggan GE; Khaja R; Scherer SW
    Cytogenet Genome Res; 2006; 115(3-4):205-14. PubMed ID: 17124402
    [TBL] [Abstract][Full Text] [Related]  

  • 33. CNV-RF Is a Random Forest-Based Copy Number Variation Detection Method Using Next-Generation Sequencing.
    Onsongo G; Baughn LB; Bower M; Henzler C; Schomaker M; Silverstein KA; Thyagarajan B
    J Mol Diagn; 2016 Nov; 18(6):872-881. PubMed ID: 27597741
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Family-Based Benchmarking of Copy Number Variation Detection Software.
    Nutsua ME; Fischer A; Nebel A; Hofmann S; Schreiber S; Krawczak M; Nothnagel M
    PLoS One; 2015; 10(7):e0133465. PubMed ID: 26197066
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm.
    Magi A; Benelli M; Yoon S; Roviello F; Torricelli F
    Nucleic Acids Res; 2011 May; 39(10):e65. PubMed ID: 21321017
    [TBL] [Abstract][Full Text] [Related]  

  • 36. CGHPRO -- a comprehensive data analysis tool for array CGH.
    Chen W; Erdogan F; Ropers HH; Lenzner S; Ullmann R
    BMC Bioinformatics; 2005 Apr; 6():85. PubMed ID: 15807904
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Identifying micro-inversions using high-throughput sequencing reads.
    He F; Li Y; Tang YH; Ma J; Zhu H
    BMC Genomics; 2016 Jan; 17 Suppl 1(Suppl 1):4. PubMed ID: 26818118
    [TBL] [Abstract][Full Text] [Related]  

  • 38. PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities.
    Malekpour SA; Pezeshk H; Sadeghi M
    BMC Bioinformatics; 2016 Nov; 18(1):30. PubMed ID: 27809781
    [TBL] [Abstract][Full Text] [Related]  

  • 39. SMASH, a fragmentation and sequencing method for genomic copy number analysis.
    Wang Z; Andrews P; Kendall J; Ma B; Hakker I; Rodgers L; Ronemus M; Wigler M; Levy D
    Genome Res; 2016 Jun; 26(6):844-51. PubMed ID: 27197213
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Nano-GLADIATOR: real-time detection of copy number alterations from nanopore sequencing data.
    Magi A; Bolognini D; Bartalucci N; Mingrino A; Semeraro R; Giovannini L; Bonifacio S; Parrini D; Pelo E; Mannelli F; Guglielmelli P; Maria Vannucchi A
    Bioinformatics; 2019 Nov; 35(21):4213-4221. PubMed ID: 30949684
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 5.