These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

149 related articles for article (PubMed ID: 28665436)

  • 1. Effects of sodium cationization versus protonation on the conformations and N-glycosidic bond stabilities of sodium cationized Urd and dUrd: solution conformation of [Urd+Na]
    Zhu Y; Roy HA; Cunningham NA; Strobehn SF; Gao J; Munshi MU; Berden G; Oomens J; Rodgers MT
    Phys Chem Chem Phys; 2017 Jul; 19(27):17637-17652. PubMed ID: 28665436
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Diverse mixtures of 2,4-dihydroxy tautomers and O4 protonated conformers of uridine and 2'-deoxyuridine coexist in the gas phase.
    Wu RR; Yang B; Frieler CE; Berden G; Oomens J; Rodgers MT
    Phys Chem Chem Phys; 2015 Oct; 17(39):25978-88. PubMed ID: 26225730
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Influence of Sodium Cationization versus Protonation on the Gas-Phase Conformations and Glycosidic Bond Stabilities of 2'-Deoxyadenosine and Adenosine.
    Zhu Y; Hamlow LA; He CC; Strobehn SF; Lee JK; Gao J; Berden G; Oomens J; Rodgers MT
    J Phys Chem B; 2016 Sep; 120(34):8892-904. PubMed ID: 27494378
    [TBL] [Abstract][Full Text] [Related]  

  • 4. IRMPD Action Spectroscopy, ER-CID Experiments, and Theoretical Studies of Sodium Cationized Thymidine and 5-Methyluridine: Kinetic Trapping During the ESI Desolvation Process Preserves the Solution Structure of [Thd+Na].
    Zhu Y; Roy HA; Cunningham NA; Strobehn SF; Gao J; Munshi MU; Berden G; Oomens J; Rodgers MT
    J Am Soc Mass Spectrom; 2017 Nov; 28(11):2423-2437. PubMed ID: 28836109
    [TBL] [Abstract][Full Text] [Related]  

  • 5. 5-Halogenation of Uridine Suppresses Protonation-Induced Tautomerization and Enhances Glycosidic Bond Stability of Protonated Uridine: Investigations via IRMPD Action Spectroscopy, ER-CID Experiments, and Theoretical Calculations.
    Mikawy NN; Roy HA; Israel E; Hamlow LA; Zhu Y; Berden G; Oomens J; Frieler CE; Rodgers MT
    J Am Soc Mass Spectrom; 2022 Nov; 33(11):2165-2180. PubMed ID: 36279168
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Gas-Phase Conformations and N-Glycosidic Bond Stabilities of Sodium Cationized 2'-Deoxyguanosine and Guanosine: Sodium Cations Preferentially Bind to the Guanine Residue.
    Zhu Y; Hamlow LA; He CC; Lee JK; Gao J; Berden G; Oomens J; Rodgers MT
    J Phys Chem B; 2017 Apr; 121(16):4048-4060. PubMed ID: 28355483
    [TBL] [Abstract][Full Text] [Related]  

  • 7. 2,4-Dihydroxy and O2 Protonated Tautomers of dThd and Thd Coexist in the Gas Phase: Methylation Alters Protonation Preferences versus dUrd and Urd.
    Wu RR; Yang B; Frieler CE; Berden G; Oomens J; Rodgers MT
    J Am Soc Mass Spectrom; 2016 Mar; 27(3):410-21. PubMed ID: 26676730
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Tautomerization lowers the activation barriers for N-glycosidic bond cleavage of protonated uridine and 2'-deoxyuridine.
    Wu RR; Rodgers MT
    Phys Chem Chem Phys; 2016 Sep; 18(35):24451-9. PubMed ID: 27536972
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural and Energetic Effects of O2'-Ribose Methylation of Protonated Pyrimidine Nucleosides.
    He CC; Hamlow LA; Zhu Y; Nei YW; Fan L; McNary CP; MaƮtre P; Steinmetz V; Schindler B; Compagnon I; Armentrout PB; Rodgers MT
    J Am Soc Mass Spectrom; 2019 Nov; 30(11):2318-2334. PubMed ID: 31435890
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structures and Relative Glycosidic Bond Stabilities of Protonated 2'-Fluoro-Substituted Purine Nucleosides.
    Devereaux ZJ; He CC; Zhu Y; Roy HA; Cunningham NA; Hamlow LA; Berden G; Oomens J; Rodgers MT
    J Am Soc Mass Spectrom; 2019 Aug; 30(8):1521-1536. PubMed ID: 31111413
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The intrinsic basicity of the phosphate backbone exceeds that of uracil and thymine residues: protonation of the phosphate moiety is preferred over the nucleobase for pdThd and pUrd.
    Wu RR; Hamlow LA; He CC; Nei YW; Berden G; Oomens J; Rodgers MT
    Phys Chem Chem Phys; 2017 Nov; 19(45):30351-30361. PubMed ID: 29099122
    [TBL] [Abstract][Full Text] [Related]  

  • 12. N3 and O2 protonated tautomeric conformations of 2'-deoxycytidine and cytidine coexist in the gas phase.
    Wu RR; Yang B; Frieler CE; Berden G; Oomens J; Rodgers MT
    J Phys Chem B; 2015 May; 119(18):5773-84. PubMed ID: 25874502
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Impact of Sodium Cationization on Gas-Phase Conformations of DNA and RNA Cytidine Mononucleotides.
    Hamlow LA; Nei YW; Wu RR; Gao J; Steill JD; Berden G; Oomens J; Rodgers MT
    J Am Soc Mass Spectrom; 2019 Sep; 30(9):1758-1767. PubMed ID: 31286444
    [TBL] [Abstract][Full Text] [Related]  

  • 14. N3 and O2 Protonated Conformers of the Cytosine Mononucleotides Coexist in the Gas Phase.
    Wu RR; Hamlow LA; He CC; Nei YW; Berden G; Oomens J; Rodgers MT
    J Am Soc Mass Spectrom; 2017 Aug; 28(8):1638-1646. PubMed ID: 28497356
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Gas-phase conformations and energetics of protonated 2'-deoxyadenosine and adenosine: IRMPD action spectroscopy and theoretical studies.
    Wu RR; Yang B; Berden G; Oomens J; Rodgers MT
    J Phys Chem B; 2015 Feb; 119(7):2795-805. PubMed ID: 25622282
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Influence of Transition Metal Cationization versus Sodium Cationization and Protonation on the Gas-Phase Tautomeric Conformations and Stability of Uracil: Application to [Ura+Cu]
    Akinyemi TE; Wu RR; Nei YW; Cunningham NA; Roy HA; Steill JD; Berden G; Oomens J; Rodgers MT
    J Am Soc Mass Spectrom; 2017 Nov; 28(11):2438-2453. PubMed ID: 28895083
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ab initio comprehensive conformational analysis of 2'-deoxyuridine, the biologically significant DNA minor nucleoside, and reconstruction of its low-temperature matrix infrared spectrum.
    Yurenko YP; Zhurakivsky RO; Ghomi M; Samijlenko SP; Hovorun DM
    J Phys Chem B; 2008 Jan; 112(4):1240-50. PubMed ID: 18092770
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protonation induces base rotation of purine nucleotides pdGuo and pGuo.
    Wu RR; He CC; Hamlow LA; Nei YW; Berden G; Oomens J; Rodgers MT
    Phys Chem Chem Phys; 2016 Jun; 18(22):15081-90. PubMed ID: 27197049
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Structural and Energetic Effects of O2'-Ribose Methylation of Protonated Purine Nucleosides.
    He CC; Hamlow LA; Devereaux ZJ; Zhu Y; Nei YW; Fan L; McNary CP; Maitre P; Steinmetz V; Schindler B; Compagnon I; Armentrout PB; Rodgers MT
    J Phys Chem B; 2018 Oct; 122(39):9147-9160. PubMed ID: 30203656
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Gas-Phase Conformations and Energetics of Protonated 2'-Deoxyguanosine and Guanosine: IRMPD Action Spectroscopy and Theoretical Studies.
    Wu RR; Yang B; Berden G; Oomens J; Rodgers MT
    J Phys Chem B; 2014 Dec; 118(51):14774-84. PubMed ID: 25423364
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.