These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
157 related articles for article (PubMed ID: 28674656)
61. COFFEE: an objective function for multiple sequence alignments. Notredame C; Holm L; Higgins DG Bioinformatics; 1998 Jun; 14(5):407-22. PubMed ID: 9682054 [TBL] [Abstract][Full Text] [Related]
62. Accuracy of structure-based sequence alignment of automatic methods. Kim C; Lee B BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866 [TBL] [Abstract][Full Text] [Related]
66. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes. Uchiyama I; Higuchi T; Kobayashi I BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155 [TBL] [Abstract][Full Text] [Related]
67. Fold-specific substitution matrices for protein classification. Vilim RB; Cunningham RM; Lu B; Kheradpour P; Stevens FJ Bioinformatics; 2004 Apr; 20(6):847-53. PubMed ID: 14764567 [TBL] [Abstract][Full Text] [Related]
68. Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees. Kück P; Meusemann K; Dambach J; Thormann B; von Reumont BM; Wägele JW; Misof B Front Zool; 2010 Mar; 7():10. PubMed ID: 20356385 [TBL] [Abstract][Full Text] [Related]
69. Bayesian coestimation of phylogeny and sequence alignment. Lunter G; Miklós I; Drummond A; Jensen JL; Hein J BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354 [TBL] [Abstract][Full Text] [Related]
73. Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome. Paila U; Kondam R; Ranjan A Nucleic Acids Res; 2008 Dec; 36(21):6664-75. PubMed ID: 18948281 [TBL] [Abstract][Full Text] [Related]
74. A polynomial time solvable formulation of multiple sequence alignment. Sze SH; Lu Y; Yang Q J Comput Biol; 2006 Mar; 13(2):309-19. PubMed ID: 16597242 [TBL] [Abstract][Full Text] [Related]
75. Building multiple alignments from pairwise alignments. Miller W Comput Appl Biosci; 1993 Apr; 9(2):169-76. PubMed ID: 8481819 [TBL] [Abstract][Full Text] [Related]
76. An expectation maximization algorithm for training hidden substitution models. Holmes I; Rubin GM J Mol Biol; 2002 Apr; 317(5):753-64. PubMed ID: 11955022 [TBL] [Abstract][Full Text] [Related]
77. Alignment of RNA base pairing probability matrices. Hofacker IL; Bernhart SH; Stadler PF Bioinformatics; 2004 Sep; 20(14):2222-7. PubMed ID: 15073017 [TBL] [Abstract][Full Text] [Related]
78. CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences. Afonnikov DA; Kolchanov NA Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W64-8. PubMed ID: 15215352 [TBL] [Abstract][Full Text] [Related]
79. Inconsistent distances in substitution matrices can be avoided by properly handling hydrophobic residues. Baussand J; Carbone A Evol Bioinform Online; 2008 Oct; 4():255-61. PubMed ID: 19204823 [TBL] [Abstract][Full Text] [Related]