599 related articles for article (PubMed ID: 28715998)
1. Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology.
Debladis E; Llauro C; Carpentier MC; Mirouze M; Panaud O
BMC Genomics; 2017 Jul; 18(1):537. PubMed ID: 28715998
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S; Beka L; Graf J; Klassen JL
BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
[TBL] [Abstract][Full Text] [Related]
3. Use of Next Generation Sequencing (NGS) technologies for the genome-wide detection of transposition.
Elbaidouri M; Chaparro C; Panaud O
Methods Mol Biol; 2013; 1057():265-74. PubMed ID: 23918435
[TBL] [Abstract][Full Text] [Related]
4. Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection.
Canaguier A; Guilbaud R; Denis E; Magdelenat G; Belser C; Istace B; Cruaud C; Wincker P; Le Paslier MC; Faivre-Rampant P; Barbe V
BMC Genomics; 2022 Apr; 23(1):317. PubMed ID: 35448948
[TBL] [Abstract][Full Text] [Related]
5. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Istace B; Friedrich A; d'Agata L; Faye S; Payen E; Beluche O; Caradec C; Davidas S; Cruaud C; Liti G; Lemainque A; Engelen S; Wincker P; Schacherer J; Aury JM
Gigascience; 2017 Feb; 6(2):1-13. PubMed ID: 28369459
[TBL] [Abstract][Full Text] [Related]
6. Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology.
Lemay MA; Sibbesen JA; Torkamaneh D; Hamel J; Levesque RC; Belzile F
BMC Biol; 2022 Feb; 20(1):53. PubMed ID: 35197050
[TBL] [Abstract][Full Text] [Related]
7. Genome assembly using Nanopore-guided long and error-free DNA reads.
Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
[TBL] [Abstract][Full Text] [Related]
8. High precision genome sequencing of engineered Gluconobacter oxydans 621H by combining long nanopore and short accurate Illumina reads.
Kranz A; Vogel A; Degner U; Kiefler I; Bott M; Usadel B; Polen T
J Biotechnol; 2017 Sep; 258():197-205. PubMed ID: 28433722
[TBL] [Abstract][Full Text] [Related]
9. Characterization of three active transposable elements recently inserted in three independent DFR-A alleles and one high-copy DNA transposon isolated from the Pink allele of the ANS gene in onion (Allium cepa L.).
Kim S; Park JY; Yang TJ
Mol Genet Genomics; 2015 Jun; 290(3):1027-37. PubMed ID: 25515665
[TBL] [Abstract][Full Text] [Related]
10. Phylogenetic Conflict in Bears Identified by Automated Discovery of Transposable Element Insertions in Low-Coverage Genomes.
Lammers F; Gallus S; Janke A; Nilsson MA
Genome Biol Evol; 2017 Oct; 9(10):2862-2878. PubMed ID: 28985298
[TBL] [Abstract][Full Text] [Related]
11. Nanopore Sequencing to Identify Transposable Element Insertions and Their Epigenetic Modifications.
Smits N; Faulkner GJ
Methods Mol Biol; 2023; 2607():151-171. PubMed ID: 36449163
[TBL] [Abstract][Full Text] [Related]
12. Characterization of MinION nanopore data for resequencing analyses.
Magi A; Giusti B; Tattini L
Brief Bioinform; 2017 Nov; 18(6):940-953. PubMed ID: 27559152
[TBL] [Abstract][Full Text] [Related]
13. A Transposon Story: From TE Content to TE Dynamic Invasion of
Mohamed M; Dang NT; Ogyama Y; Burlet N; Mugat B; Boulesteix M; Mérel V; Veber P; Salces-Ortiz J; Severac D; Pélisson A; Vieira C; Sabot F; Fablet M; Chambeyron S
Cells; 2020 Jul; 9(8):. PubMed ID: 32722451
[TBL] [Abstract][Full Text] [Related]
14. Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants.
Riaz N; Leung P; Barton K; Smith MA; Carswell S; Bull R; Lloyd AR; Rodrigo C
BMC Genomics; 2021 Mar; 22(1):148. PubMed ID: 33653280
[TBL] [Abstract][Full Text] [Related]
15. TE-Tracker: systematic identification of transposition events through whole-genome resequencing.
Gilly A; Etcheverry M; Madoui MA; Guy J; Quadrana L; Alberti A; Martin A; Heitkam T; Engelen S; Labadie K; Le Pen J; Wincker P; Colot V; Aury JM
BMC Bioinformatics; 2014 Nov; 15(1):377. PubMed ID: 25408240
[TBL] [Abstract][Full Text] [Related]
16. Transposable element finder (TEF): finding active transposable elements from next generation sequencing data.
Miyao A; Yamanouchi U
BMC Bioinformatics; 2022 Nov; 23(1):500. PubMed ID: 36418944
[TBL] [Abstract][Full Text] [Related]
17. Resolving fine-grained dynamics of retrotransposons: comparative analysis of inferential methods and genomic resources.
Choudhury RR; Neuhaus JM; Parisod C
Plant J; 2017 Jun; 90(5):979-993. PubMed ID: 28244250
[TBL] [Abstract][Full Text] [Related]
18. Oxford Nanopore sequencing: new opportunities for plant genomics?
Dumschott K; Schmidt MH; Chawla HS; Snowdon R; Usadel B
J Exp Bot; 2020 Sep; 71(18):5313-5322. PubMed ID: 32459850
[TBL] [Abstract][Full Text] [Related]
19. The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements.
Staton SE; Bakken BH; Blackman BK; Chapman MA; Kane NC; Tang S; Ungerer MC; Knapp SJ; Rieseberg LH; Burke JM
Plant J; 2012 Oct; 72(1):142-53. PubMed ID: 22691070
[TBL] [Abstract][Full Text] [Related]
20. Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea.
Zhang X; Wessler SR
Proc Natl Acad Sci U S A; 2004 Apr; 101(15):5589-94. PubMed ID: 15064405
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]