These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1120 related articles for article (PubMed ID: 28731476)

  • 1. Exact sequence variants should replace operational taxonomic units in marker-gene data analysis.
    Callahan BJ; McMurdie PJ; Holmes SP
    ISME J; 2017 Dec; 11(12):2639-2643. PubMed ID: 28731476
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
    Schloss PD
    mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hawaiian Fungal Amplicon Sequence Variants Reveal Otherwise Hidden Biogeography.
    Tipton L; Zahn GL; Darcy JL; Amend AS; Hynson NA
    Microb Ecol; 2022 Jan; 83(1):48-57. PubMed ID: 33742230
    [TBL] [Abstract][Full Text] [Related]  

  • 4. BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities.
    Daisley BA; Reid G
    mSystems; 2021 Apr; 6(2):. PubMed ID: 33824193
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches.
    Nearing JT; Douglas GM; Comeau AM; Langille MGI
    PeerJ; 2018; 6():e5364. PubMed ID: 30123705
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences.
    Catlett D; Son K; Liang C
    PeerJ; 2021; 9():e11865. PubMed ID: 34395092
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units.
    Glassman SI; Martiny JBH
    mSphere; 2018 Jul; 3(4):. PubMed ID: 30021874
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
    Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
    mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing.
    Poirier S; Rué O; Peguilhan R; Coeuret G; Zagorec M; Champomier-Vergès MC; Loux V; Chaillou S
    PLoS One; 2018; 13(9):e0204629. PubMed ID: 30252901
    [TBL] [Abstract][Full Text] [Related]  

  • 10. bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences.
    Chen SY; Deng F; Huang Y; Jia X; Liu YP; Lai SJ
    J Comput Biol; 2016 Apr; 23(4):229-38. PubMed ID: 26950196
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The concept of operational taxonomic units revisited: genomes of bacteria that are regarded as closely related are often highly dissimilar.
    Lladó Fernández S; Větrovský T; Baldrian P
    Folia Microbiol (Praha); 2019 Jan; 64(1):19-23. PubMed ID: 29926341
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Metabarcoding free-living marine nematodes using curated 18S and CO1 reference sequence databases for species-level taxonomic assignments.
    Macheriotou L; Guilini K; Bezerra TN; Tytgat B; Nguyen DT; Phuong Nguyen TX; Noppe F; Armenteros M; Boufahja F; Rigaux A; Vanreusel A; Derycke S
    Ecol Evol; 2019 Feb; 9(3):1211-1226. PubMed ID: 30805154
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Improving eDNA-based protist diversity assessments using networks of amplicon sequence variants.
    Forster D; Lentendu G; Filker S; Dubois E; Wilding TA; Stoeck T
    Environ Microbiol; 2019 Nov; 21(11):4109-4124. PubMed ID: 31361938
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Reconciliation between operational taxonomic units and species boundaries.
    Mysara M; Vandamme P; Props R; Kerckhof FM; Leys N; Boon N; Raes J; Monsieurs P
    FEMS Microbiol Ecol; 2017 Apr; 93(4):. PubMed ID: 28334218
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies.
    Puente-Sánchez F; Aguirre J; Parro V
    Nucleic Acids Res; 2016 Feb; 44(4):e40. PubMed ID: 26553806
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A protocol for species delineation of public DNA databases, applied to the Insecta.
    Chesters D; Zhu CD
    Syst Biol; 2014 Sep; 63(5):712-25. PubMed ID: 24929897
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
    Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
    J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities.
    Golob JL; Margolis E; Hoffman NG; Fredricks DN
    BMC Bioinformatics; 2017 May; 18(1):283. PubMed ID: 28558684
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assessment of a 16S rRNA amplicon Illumina sequencing procedure for studying the microbiome of a symbiont-rich aphid genus.
    Jousselin E; Clamens AL; Galan M; Bernard M; Maman S; Gschloessl B; Duport G; Meseguer AS; Calevro F; Coeur d'acier A
    Mol Ecol Resour; 2016 May; 16(3):628-40. PubMed ID: 26458227
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Operational taxonomic units (OTUs) of endophytic bacteria isolated from banana cultivars in the Amazon.
    Souza Á; Nogueira VB; Cruz JC; Sousa NR; Procópio AR; Silva GF
    Genet Mol Res; 2015 Aug; 14(3):9932-8. PubMed ID: 26345928
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 56.