145 related articles for article (PubMed ID: 28731857)
1. CytoMCS: A Multiple Maximum Common Subgraph Detection Tool for Cytoscape.
Larsen SJ; Baumbach J
J Integr Bioinform; 2017 Jul; 14(2):. PubMed ID: 28731857
[TBL] [Abstract][Full Text] [Related]
2. Identification of key player genes in gene regulatory networks.
Nazarieh M; Wiese A; Will T; Hamed M; Helms V
BMC Syst Biol; 2016 Sep; 10(1):88. PubMed ID: 27599550
[TBL] [Abstract][Full Text] [Related]
3. KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
Tian Y; Zhang B; Hoffman EP; Clarke R; Zhang Z; Shih IeM; Xuan J; Herrington DM; Wang Y
Bioinformatics; 2015 Jan; 31(2):287-9. PubMed ID: 25273109
[TBL] [Abstract][Full Text] [Related]
4. Biological Network Inference and analysis using SEBINI and CABIN.
Taylor R; Singhal M
Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531
[TBL] [Abstract][Full Text] [Related]
5. Development and use of a Cytoscape app for GRNCOP2.
Díaz-Montaña JJ; Díaz-Díaz N; Barranco CD; Ponzoni I
Comput Methods Programs Biomed; 2019 Aug; 177():211-218. PubMed ID: 31319950
[TBL] [Abstract][Full Text] [Related]
6. GNC-app: A new Cytoscape app to rate gene networks biological coherence using gene-gene indirect relationships.
Díaz-Montaña JJ; Gómez-Vela F; Díaz-Díaz N
Biosystems; 2018 Apr; 166():61-65. PubMed ID: 29408296
[TBL] [Abstract][Full Text] [Related]
7. CytoGEDEVO-global alignment of biological networks with Cytoscape.
Malek M; Ibragimov R; Albrecht M; Baumbach J
Bioinformatics; 2016 Apr; 32(8):1259-61. PubMed ID: 26669930
[TBL] [Abstract][Full Text] [Related]
8. Exploratory Analysis of Biological Networks through Visualization, Clustering, and Functional Annotation in Cytoscape.
Baryshnikova A
Cold Spring Harb Protoc; 2016 Jun; 2016(6):. PubMed ID: 26988373
[TBL] [Abstract][Full Text] [Related]
9. XlinkCyNET: A Cytoscape Application for Visualization of Protein Interaction Networks Based on Cross-Linking Mass Spectrometry Identifications.
Lima DB; Zhu Y; Liu F
J Proteome Res; 2021 Apr; 20(4):1943-1950. PubMed ID: 33689356
[TBL] [Abstract][Full Text] [Related]
10. L-GRAAL: Lagrangian graphlet-based network aligner.
Malod-Dognin N; Pržulj N
Bioinformatics; 2015 Jul; 31(13):2182-9. PubMed ID: 25725498
[TBL] [Abstract][Full Text] [Related]
11. NOA: a cytoscape plugin for network ontology analysis.
Zhang C; Wang J; Hanspers K; Xu D; Chen L; Pico AR
Bioinformatics; 2013 Aug; 29(16):2066-7. PubMed ID: 23749961
[TBL] [Abstract][Full Text] [Related]
12. CytoCluster: A Cytoscape Plugin for Cluster Analysis and Visualization of Biological Networks.
Li M; Li D; Tang Y; Wu F; Wang J
Int J Mol Sci; 2017 Aug; 18(9):. PubMed ID: 28858211
[TBL] [Abstract][Full Text] [Related]
13. An algorithm for network motif discovery in biological networks.
Qin G; Gao L
Int J Data Min Bioinform; 2012; 6(1):1-16. PubMed ID: 22479815
[TBL] [Abstract][Full Text] [Related]
14. Fast Subgraph Matching Strategies Based on Pattern-Only Heuristics.
Aparo A; Bonnici V; Micale G; Ferro A; Shasha D; Pulvirenti A; Giugno R
Interdiscip Sci; 2019 Mar; 11(1):21-32. PubMed ID: 30790228
[TBL] [Abstract][Full Text] [Related]
15. The Cyni framework for network inference in Cytoscape.
Guitart-Pla O; Kustagi M; Rügheimer F; Califano A; Schwikowski B
Bioinformatics; 2015 May; 31(9):1499-501. PubMed ID: 25527096
[TBL] [Abstract][Full Text] [Related]
16. C-Biomarker.net: A Cytoscape app for the identification of cancer biomarker genes from cores of large biomolecular networks.
Tran TD; Nguyen MT
Biosystems; 2023 Apr; 226():104887. PubMed ID: 36990379
[TBL] [Abstract][Full Text] [Related]
17. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization.
Li M; Yang J; Wu FX; Pan Y; Wang J
Bioinformatics; 2018 May; 34(9):1597-1599. PubMed ID: 29293938
[TBL] [Abstract][Full Text] [Related]
18. Protein-Protein Interaction Network Exploration Using Cytoscape.
Majeed A; Mukhtar S
Methods Mol Biol; 2023; 2690():419-427. PubMed ID: 37450163
[TBL] [Abstract][Full Text] [Related]
19. INDEX: Incremental depth extension approach for protein-protein interaction networks alignment.
Mir A; Naghibzadeh M; Saadati N
Biosystems; 2017 Dec; 162():24-34. PubMed ID: 28860070
[TBL] [Abstract][Full Text] [Related]
20. Parallel Exchange of Randomized SubGraphs for Optimization of Network Alignment: PERSONA.
Tuncay EG; Erdur RC; Conrad T
IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(3):2064-2077. PubMed ID: 37015402
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
