These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. Reversible Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Mouse Embryonic Stem Cells. King AD; Huang K; Rubbi L; Liu S; Wang CY; Wang Y; Pellegrini M; Fan G Cell Rep; 2016 Sep; 17(1):289-302. PubMed ID: 27681438 [TBL] [Abstract][Full Text] [Related]
6. Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. Hou Y; Guo H; Cao C; Li X; Hu B; Zhu P; Wu X; Wen L; Tang F; Huang Y; Peng J Cell Res; 2016 Mar; 26(3):304-19. PubMed ID: 26902283 [TBL] [Abstract][Full Text] [Related]
7. Preferable in vitro condition for maintaining faithful DNA methylation imprinting in mouse embryonic stem cells. Lee J; Matsuzawa A; Shiura H; Sutani A; Ishino F Genes Cells; 2018 Mar; 23(3):146-160. PubMed ID: 29356242 [TBL] [Abstract][Full Text] [Related]
8. Bisulfite-independent analysis of CpG island methylation enables genome-scale stratification of single cells. Han L; Wu HJ; Zhu H; Kim KY; Marjani SL; Riester M; Euskirchen G; Zi X; Yang J; Han J; Snyder M; Park IH; Irizarry R; Weissman SM; Michor F; Fan R; Pan X Nucleic Acids Res; 2017 Jun; 45(10):e77. PubMed ID: 28126923 [TBL] [Abstract][Full Text] [Related]
9. Simultaneous Profiling of mRNA Transcriptome and DNA Methylome from a Single Cell. Hu Y; An Q; Guo Y; Zhong J; Fan S; Rao P; Liu X; Liu Y; Fan G Methods Mol Biol; 2019; 1979():363-377. PubMed ID: 31028648 [TBL] [Abstract][Full Text] [Related]
10. Integrative epigenomic analysis reveals unique epigenetic signatures involved in unipotency of mouse female germline stem cells. Zhang XL; Wu J; Wang J; Shen T; Li H; Lu J; Gu Y; Kang Y; Wong CH; Ngan CY; Shao Z; Wu J; Zhao X Genome Biol; 2016 Jul; 17(1):162. PubMed ID: 27465593 [TBL] [Abstract][Full Text] [Related]
11. EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data. Teschendorff AE; Zhu T; Breeze CE; Beck S Genome Biol; 2020 Sep; 21(1):221. PubMed ID: 32883324 [TBL] [Abstract][Full Text] [Related]
12. Reconstructing cell cycle pseudo time-series via single-cell transcriptome data. Liu Z; Lou H; Xie K; Wang H; Chen N; Aparicio OM; Zhang MQ; Jiang R; Chen T Nat Commun; 2017 Jun; 8(1):22. PubMed ID: 28630425 [TBL] [Abstract][Full Text] [Related]
13. Simultaneous profiling of transcriptome and DNA methylome from a single cell. Hu Y; Huang K; An Q; Du G; Hu G; Xue J; Zhu X; Wang CY; Xue Z; Fan G Genome Biol; 2016 May; 17():88. PubMed ID: 27150361 [TBL] [Abstract][Full Text] [Related]
14. The Epigenetic Reprogramming Roadmap in Generation of iPSCs from Somatic Cells. Brix J; Zhou Y; Luo Y J Genet Genomics; 2015 Dec; 42(12):661-70. PubMed ID: 26743984 [TBL] [Abstract][Full Text] [Related]
15. Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs. Hayashi T; Ozaki H; Sasagawa Y; Umeda M; Danno H; Nikaido I Nat Commun; 2018 Feb; 9(1):619. PubMed ID: 29434199 [TBL] [Abstract][Full Text] [Related]
16. An epigenetic switch regulates de novo DNA methylation at a subset of pluripotency gene enhancers during embryonic stem cell differentiation. Petell CJ; Alabdi L; He M; San Miguel P; Rose R; Gowher H Nucleic Acids Res; 2016 Sep; 44(16):7605-17. PubMed ID: 27179026 [TBL] [Abstract][Full Text] [Related]
17. Promyelocytic Leukemia Protein Is an Essential Regulator of Stem Cell Pluripotency and Somatic Cell Reprogramming. Hadjimichael C; Chanoumidou K; Nikolaou C; Klonizakis A; Theodosi GI; Makatounakis T; Papamatheakis J; Kretsovali A Stem Cell Reports; 2017 May; 8(5):1366-1378. PubMed ID: 28392218 [TBL] [Abstract][Full Text] [Related]
18. EPITRANS: a database that integrates epigenome and transcriptome data. Cho SY; Chai JC; Park SJ; Seo H; Sohn CB; Lee YS Mol Cells; 2013 Nov; 36(5):472-5. PubMed ID: 24213601 [TBL] [Abstract][Full Text] [Related]
19. Dpath software reveals hierarchical haemato-endothelial lineages of Etv2 progenitors based on single-cell transcriptome analysis. Gong W; Rasmussen TL; Singh BN; Koyano-Nakagawa N; Pan W; Garry DJ Nat Commun; 2017 Feb; 8():14362. PubMed ID: 28181481 [TBL] [Abstract][Full Text] [Related]