These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

150 related articles for article (PubMed ID: 28787030)

  • 21. MPE-seq, a new method for the genome-wide analysis of chromatin structure.
    Ishii H; Kadonaga JT; Ren B
    Proc Natl Acad Sci U S A; 2015 Jul; 112(27):E3457-65. PubMed ID: 26080409
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Chemical map-based prediction of nucleosome positioning using the Bioconductor package nuCpos.
    Kato H; Shimizu M; Urano T
    BMC Bioinformatics; 2021 Jun; 22(1):322. PubMed ID: 34120589
    [TBL] [Abstract][Full Text] [Related]  

  • 23. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.
    Mendoza-Parra MA; Saleem MA; Blum M; Cholley PE; Gronemeyer H
    Methods Mol Biol; 2016; 1418():243-65. PubMed ID: 27008019
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Unbiased chromatin accessibility profiling by RED-seq uncovers unique features of nucleosome variants in vivo.
    Chen PB; Zhu LJ; Hainer SJ; McCannell KN; Fazzio TG
    BMC Genomics; 2014 Dec; 15(1):1104. PubMed ID: 25494698
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Profiling Accessible Chromatin and Nucleosomes in the Mammalian Genome.
    Lim HW; Iwafuchi M
    Methods Mol Biol; 2023; 2599():59-68. PubMed ID: 36427143
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Genome-wide profiling of nucleosome position and chromatin accessibility in single cells using scMNase-seq.
    Gao W; Lai B; Ni B; Zhao K
    Nat Protoc; 2020 Jan; 15(1):68-85. PubMed ID: 31836865
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Distinct features of lamin A-interacting chromatin domains mapped by ChIP-sequencing from sonicated or micrococcal nuclease-digested chromatin.
    Lund EG; Duband-Goulet I; Oldenburg A; Buendia B; Collas P
    Nucleus; 2015; 6(1):30-9. PubMed ID: 25602132
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Generation of Native Chromatin Immunoprecipitation Sequencing Libraries for Nucleosome Density Analysis.
    Lorzadeh A; Lopez Gutierrez R; Jackson L; Moksa M; Hirst M
    J Vis Exp; 2017 Dec; (130):. PubMed ID: 29286469
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Low-Input MNase Accessibility of Chromatin (Low-Input MACC).
    Lion M; Tolstorukov MY; Oettinger MA
    Curr Protoc Mol Biol; 2019 Jun; 127(1):e91. PubMed ID: 31237423
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Genome-wide mapping of nucleosome occupancy, histone modifications, and gene expression using next-generation sequencing technology.
    Wei G; Hu G; Cui K; Zhao K
    Methods Enzymol; 2012; 513():297-313. PubMed ID: 22929775
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Single-Assay Profiling of Nucleosome Occupancy and Chromatin Accessibility.
    Cook A; Mieczkowski J; Tolstorukov MY
    Curr Protoc Mol Biol; 2017 Oct; 120():21.34.1-21.34.18. PubMed ID: 28967996
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Combined micrococcal nuclease and exonuclease III digestion reveals precise positions of the nucleosome core/linker junctions: implications for high-resolution nucleosome mapping.
    Nikitina T; Wang D; Gomberg M; Grigoryev SA; Zhurkin VB
    J Mol Biol; 2013 Jun; 425(11):1946-1960. PubMed ID: 23458408
    [TBL] [Abstract][Full Text] [Related]  

  • 33. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
    Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
    Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Open chromatin reveals the functional maize genome.
    Rodgers-Melnick E; Vera DL; Bass HW; Buckler ES
    Proc Natl Acad Sci U S A; 2016 May; 113(22):E3177-84. PubMed ID: 27185945
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Rapid and inexpensive preparation of genome-wide nucleosome footprints from model and non-model organisms.
    McKnight LE; Crandall JG; Bailey TB; Banks OGB; Orlandi KN; Truong VN; Donovan DA; Waddell GL; Wiles ET; Hansen SD; Selker EU; McKnight JN
    STAR Protoc; 2021 Jun; 2(2):100486. PubMed ID: 34041500
    [TBL] [Abstract][Full Text] [Related]  

  • 36. ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.
    Qin Q; Mei S; Wu Q; Sun H; Li L; Taing L; Chen S; Li F; Liu T; Zang C; Xu H; Chen Y; Meyer CA; Zhang Y; Brown M; Long HW; Liu XS
    BMC Bioinformatics; 2016 Oct; 17(1):404. PubMed ID: 27716038
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
    Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
    J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.
    Vera DL; Madzima TF; Labonne JD; Alam MP; Hoffman GG; Girimurugan SB; Zhang J; McGinnis KM; Dennis JH; Bass HW
    Plant Cell; 2014 Oct; 26(10):3883-93. PubMed ID: 25361955
    [TBL] [Abstract][Full Text] [Related]  

  • 39. PING 2.0: an R/Bioconductor package for nucleosome positioning using next-generation sequencing data.
    Woo S; Zhang X; Sauteraud R; Robert F; Gottardo R
    Bioinformatics; 2013 Aug; 29(16):2049-50. PubMed ID: 23786769
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Dr.seq2: A quality control and analysis pipeline for parallel single cell transcriptome and epigenome data.
    Zhao C; Hu S; Huo X; Zhang Y
    PLoS One; 2017; 12(7):e0180583. PubMed ID: 28671995
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.