These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

214 related articles for article (PubMed ID: 28811664)

  • 21. Modeling Antibody-Antigen Complexes by Information-Driven Docking.
    Ambrosetti F; Jiménez-García B; Roel-Touris J; Bonvin AMJJ
    Structure; 2020 Jan; 28(1):119-129.e2. PubMed ID: 31727476
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Robustification of RosettaAntibody and Rosetta SnugDock.
    Jeliazkov JR; Frick R; Zhou J; Gray JJ
    PLoS One; 2021; 16(3):e0234282. PubMed ID: 33764990
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A comparison of antibody-antigen complex sequence-to-structure prediction methods and their systematic biases.
    McCoy KM; Ackerman ME; Grigoryan G
    Protein Sci; 2024 Sep; 33(9):e5127. PubMed ID: 39167052
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Mapping of antibody epitopes based on docking and homology modeling.
    Desta IT; Kotelnikov S; Jones G; Ghani U; Abyzov M; Kholodov Y; Standley DM; Sabitova M; Beglov D; Vajda S; Kozakov D
    Proteins; 2023 Feb; 91(2):171-182. PubMed ID: 36088633
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A soft docking algorithm for predicting the structure of antibody-antigen complexes.
    Li CH; Ma XH; Chen WZ; Wang CX
    Proteins; 2003 Jul; 52(1):47-50. PubMed ID: 12784367
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Anti-cooperativity in diffusion-controlled reactions with pairs of anisotropic domains: a model for the antigen-antibody encounter.
    Piazza F; Rios Pde L; Fanelli D; Bongini L; Skoglund U
    Eur Biophys J; 2005 Oct; 34(7):899-911. PubMed ID: 15803329
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Complex-type-dependent scoring functions in protein-protein docking.
    Li CH; Ma XH; Shen LZ; Chang S; Chen WZ; Wang CX
    Biophys Chem; 2007 Aug; 129(1):1-10. PubMed ID: 17540496
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Variations in antigen-antibody association kinetics as a function of pH and salt concentration: a QSAR and molecular modeling study.
    Dejaegere A; Choulier L; Lafont V; De Genst E; Altschuh D
    Biochemistry; 2005 Nov; 44(44):14409-18. PubMed ID: 16262241
    [TBL] [Abstract][Full Text] [Related]  

  • 29. [Regression analysis to select native-like structures from decoys of antigen-antibody docking].
    Chen Z; Chi X; Fan P; Zhang G; Wang M; Yu C; Chen W
    Sheng Wu Gong Cheng Xue Bao; 2018 Jun; 34(6):993-1001. PubMed ID: 29943545
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Role of antibody paratope conformational flexibility in the manifestation of molecular mimicry.
    Krishnan L; Sahni G; Kaur KJ; Salunke DM
    Biophys J; 2008 Feb; 94(4):1367-76. PubMed ID: 18032557
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Modeling Immunity with Rosetta: Methods for Antibody and Antigen Design.
    Schoeder CT; Schmitz S; Adolf-Bryfogle J; Sevy AM; Finn JA; Sauer MF; Bozhanova NG; Mueller BK; Sangha AK; Bonet J; Sheehan JH; Kuenze G; Marlow B; Smith ST; Woods H; Bender BJ; Martina CE; Del Alamo D; Kodali P; Gulsevin A; Schief WR; Correia BE; Crowe JE; Meiler J; Moretti R
    Biochemistry; 2021 Mar; 60(11):825-846. PubMed ID: 33705117
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A protein-protein docking benchmark.
    Chen R; Mintseris J; Janin J; Weng Z
    Proteins; 2003 Jul; 52(1):88-91. PubMed ID: 12784372
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Antibody i-Patch prediction of the antibody binding site improves rigid local antibody-antigen docking.
    Krawczyk K; Baker T; Shi J; Deane CM
    Protein Eng Des Sel; 2013 Oct; 26(10):621-9. PubMed ID: 24006373
    [TBL] [Abstract][Full Text] [Related]  

  • 34. IsAb: a computational protocol for antibody design.
    Liang T; Chen H; Yuan J; Jiang C; Hao Y; Wang Y; Feng Z; Xie XQ
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33876197
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Structural prediction of antibody-APRIL complexes by computational docking constrained by antigen saturation mutagenesis library data.
    Wollacott AM; Robinson LN; Ramakrishnan B; Tissire H; Viswanathan K; Shriver Z; Babcock GJ
    J Mol Recognit; 2019 Jul; 32(7):e2778. PubMed ID: 30761651
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Conformational flexibility and kinetic complexity in antibody-antigen interactions.
    Kourentzi K; Srinivasan M; Smith-Gill SJ; Willson RC
    J Mol Recognit; 2008; 21(2):114-21. PubMed ID: 18383102
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Exploring designability of electrostatic complementarity at an antigen-antibody interface directed by mutagenesis, biophysical analysis, and molecular dynamics simulations.
    Yoshida K; Kuroda D; Kiyoshi M; Nakakido M; Nagatoishi S; Soga S; Shirai H; Tsumoto K
    Sci Rep; 2019 Mar; 9(1):4482. PubMed ID: 30872635
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Superposition-free comparison and clustering of antibody binding sites: implications for the prediction of the nature of their antigen.
    Di Rienzo L; Milanetti E; Lepore R; Olimpieri PP; Tramontano A
    Sci Rep; 2017 Mar; 7():45053. PubMed ID: 28338016
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Computational Tools for Aiding Rational Antibody Design.
    Krawczyk K; Dunbar J; Deane CM
    Methods Mol Biol; 2017; 1529():399-416. PubMed ID: 27914064
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Machine-learning-based structural analysis of interactions between antibodies and antigens.
    Zhang G; Kuang X; Zhang Y; Liu Y; Su Z; Zhang T; Wu Y
    Biosystems; 2024 Sep; 243():105264. PubMed ID: 38964652
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.