BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

113 related articles for article (PubMed ID: 28811833)

  • 1. NSiteMatch: Prediction of Binding Sites of Nucleotides by Identifying the Structure Similarity of Local Surface Patches.
    Sun J; Chen K
    Comput Math Methods Med; 2017; 2017():5471607. PubMed ID: 28811833
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MetaPocket: a meta approach to improve protein ligand binding site prediction.
    Huang B
    OMICS; 2009 Aug; 13(4):325-30. PubMed ID: 19645590
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A critical comparative assessment of predictions of protein-binding sites for biologically relevant organic compounds.
    Chen K; Mizianty MJ; Gao J; Kurgan L
    Structure; 2011 May; 19(5):613-21. PubMed ID: 21565696
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.
    Laurie AT; Jackson RM
    Bioinformatics; 2005 May; 21(9):1908-16. PubMed ID: 15701681
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction.
    Zhang Z; Li Y; Lin B; Schroeder M; Huang B
    Bioinformatics; 2011 Aug; 27(15):2083-8. PubMed ID: 21636590
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein functional surfaces: global shape matching and local spatial alignments of ligand binding sites.
    Binkowski TA; Joachimiak A
    BMC Struct Biol; 2008 Oct; 8():45. PubMed ID: 18954462
    [TBL] [Abstract][Full Text] [Related]  

  • 7. FINDSITE
    Zhou H; Cao H; Skolnick J
    J Chem Inf Model; 2018 Nov; 58(11):2343-2354. PubMed ID: 30278128
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PoLi: A Virtual Screening Pipeline Based on Template Pocket and Ligand Similarity.
    Roy A; Srinivasan B; Skolnick J
    J Chem Inf Model; 2015 Aug; 55(8):1757-70. PubMed ID: 26225536
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation.
    Brylinski M; Skolnick J
    Proc Natl Acad Sci U S A; 2008 Jan; 105(1):129-34. PubMed ID: 18165317
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Predicting protein-ligand binding site using support vector machine with protein properties.
    Wong GY; Leung FH; Ling SH
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(6):1517-29. PubMed ID: 24407309
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An empirical approach for detecting nucleotide-binding sites on proteins.
    Saito M; Go M; Shirai T
    Protein Eng Des Sel; 2006 Feb; 19(2):67-75. PubMed ID: 16403825
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Towards a structural classification of phosphate binding sites in protein-nucleotide complexes: an automated all-against-all structural comparison using geometric matching.
    Brakoulias A; Jackson RM
    Proteins; 2004 Aug; 56(2):250-60. PubMed ID: 15211509
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluation of the searching abilities of HBOP and HBSITE for binding pocket detection.
    Oda A; Yamaotsu N; Hirono S
    J Comput Chem; 2009 Dec; 30(16):2728-37. PubMed ID: 19399761
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Binding ligand prediction for proteins using partial matching of local surface patches.
    Sael L; Kihara D
    Int J Mol Sci; 2010; 11(12):5009-26. PubMed ID: 21614188
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms.
    Jian JW; Elumalai P; Pitti T; Wu CY; Tsai KC; Chang JY; Peng HP; Yang AS
    PLoS One; 2016; 11(8):e0160315. PubMed ID: 27513851
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identification of nucleotide-binding sites in protein structures: a novel approach based on nucleotide modularity.
    Parca L; Gherardini PF; Truglio M; Mangone I; Ferrè F; Helmer-Citterich M; Ausiello G
    PLoS One; 2012; 7(11):e50240. PubMed ID: 23209685
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting protein-ligand binding sites based on an improved geometric algorithm.
    He J; Wei DQ; Wang JF; Chou KC
    Protein Pept Lett; 2011 Oct; 18(10):997-1001. PubMed ID: 21592081
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Designing template-free predictor for targeting protein-ligand binding sites with classifier ensemble and spatial clustering.
    Yu DJ; Hu J; Yang J; Shen HB; Tang J; Yang JY
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(4):994-1008. PubMed ID: 24334392
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A web server for analysis, comparison and prediction of protein ligand binding sites.
    Singh H; Srivastava HK; Raghava GP
    Biol Direct; 2016 Mar; 11(1):14. PubMed ID: 27016210
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Deciphering common recognition principles of nucleoside mono/di and tri-phosphates binding in diverse proteins via structural matching of their binding sites.
    Bhagavat R; Srinivasan N; Chandra N
    Proteins; 2017 Sep; 85(9):1699-1712. PubMed ID: 28547747
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.