BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

266 related articles for article (PubMed ID: 28830358)

  • 21. ShortStack: comprehensive annotation and quantification of small RNA genes.
    Axtell MJ
    RNA; 2013 Jun; 19(6):740-51. PubMed ID: 23610128
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Advancing clinical genomics and precision medicine with GVViZ: FAIR bioinformatics platform for variable gene-disease annotation, visualization, and expression analysis.
    Ahmed Z; Renart EG; Zeeshan S; Dong X
    Hum Genomics; 2021 Jun; 15(1):37. PubMed ID: 34174938
    [TBL] [Abstract][Full Text] [Related]  

  • 23. DETECTION OF BACTERIAL SMALL TRANSCRIPTS FROM RNA-SEQ DATA: A COMPARATIVE ASSESSMENT.
    Peña-Castillo L; Grüell M; Mulligan ME; Lang AS
    Pac Symp Biocomput; 2016; 21():456-67. PubMed ID: 26776209
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology.
    Zhang B; Xie D; Jin Z
    J Integr Plant Biol; 2012 Feb; 54(2):73-86. PubMed ID: 22221297
    [TBL] [Abstract][Full Text] [Related]  

  • 25. mirTools 2.0 for non-coding RNA discovery, profiling, and functional annotation based on high-throughput sequencing.
    Wu J; Liu Q; Wang X; Zheng J; Wang T; You M; Sheng Sun Z; Shi Q
    RNA Biol; 2013 Jul; 10(7):1087-92. PubMed ID: 23778453
    [TBL] [Abstract][Full Text] [Related]  

  • 26. ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes.
    Yu SH; Vogel J; Förstner KU
    Gigascience; 2018 Sep; 7(9):. PubMed ID: 30169674
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Common and phylogenetically widespread coding for peptides by bacterial small RNAs.
    Friedman RC; Kalkhof S; Doppelt-Azeroual O; Mueller SA; Chovancová M; von Bergen M; Schwikowski B
    BMC Genomics; 2017 Jul; 18(1):553. PubMed ID: 28732463
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism.
    van der Meulen SB; de Jong A; Kok J
    RNA Biol; 2016; 13(3):353-66. PubMed ID: 26950529
    [TBL] [Abstract][Full Text] [Related]  

  • 29. CPSS: a computational platform for the analysis of small RNA deep sequencing data.
    Zhang Y; Xu B; Yang Y; Ban R; Zhang H; Jiang X; Cooke HJ; Xue Y; Shi Q
    Bioinformatics; 2012 Jul; 28(14):1925-7. PubMed ID: 22576177
    [TBL] [Abstract][Full Text] [Related]  

  • 30. mtR_find: A Parallel Processing Tool to Identify and Annotate RNAs Derived from the Mitochondrial Genome.
    Mohideen AMSH; Johansen SD; Babiak I
    Int J Mol Sci; 2023 Feb; 24(5):. PubMed ID: 36901804
    [TBL] [Abstract][Full Text] [Related]  

  • 31. miRA: adaptable novel miRNA identification in plants using small RNA sequencing data.
    Evers M; Huttner M; Dueck A; Meister G; Engelmann JC
    BMC Bioinformatics; 2015 Nov; 16():370. PubMed ID: 26542525
    [TBL] [Abstract][Full Text] [Related]  

  • 32. DaMold: A data-mining platform for variant annotation and visualization in molecular diagnostics research.
    Pandey RV; Pabinger S; Kriegner A; Weinhäusel A
    Hum Mutat; 2017 Jul; 38(7):778-787. PubMed ID: 28397319
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Genix: a new online automated pipeline for bacterial genome annotation.
    Kremer FS; Eslabão MR; Dellagostin OA; Pinto LD
    FEMS Microbiol Lett; 2016 Dec; 363(23):. PubMed ID: 27856568
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori.
    Bischler T; Tan HS; Nieselt K; Sharma CM
    Methods; 2015 Sep; 86():89-101. PubMed ID: 26091613
    [TBL] [Abstract][Full Text] [Related]  

  • 35. A comprehensive collection of annotations to interpret sequence variation in human mitochondrial transfer RNAs.
    Diroma MA; Lubisco P; Attimonelli M
    BMC Bioinformatics; 2016 Nov; 17(Suppl 12):338. PubMed ID: 28185569
    [TBL] [Abstract][Full Text] [Related]  

  • 36. FEATnotator: A tool for integrated annotation of sequence features and variation, facilitating interpretation in genomics experiments.
    Podicheti R; Mockaitis K
    Methods; 2015 Jun; 79-80():11-7. PubMed ID: 25934264
    [TBL] [Abstract][Full Text] [Related]  

  • 37. DeepBase: annotation and discovery of microRNAs and other noncoding RNAs from deep-sequencing data.
    Yang JH; Qu LH
    Methods Mol Biol; 2012; 822():233-48. PubMed ID: 22144203
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Computational approaches and challenges for identification and annotation of non-coding RNAs using RNA-Seq.
    Dindhoria K; Monga I; Thind AS
    Funct Integr Genomics; 2022 Dec; 22(6):1105-1112. PubMed ID: 36409436
    [TBL] [Abstract][Full Text] [Related]  

  • 39. DoriTool: A Bioinformatics Integrative Tool for Post-Association Functional Annotation.
    Martín-Antoniano I; Alonso L; Madrid M; López de Maturana E; Malats N
    Public Health Genomics; 2017; 20(2):126-135. PubMed ID: 28700989
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Snpdat: easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.
    Doran AG; Creevey CJ
    BMC Bioinformatics; 2013 Feb; 14():45. PubMed ID: 23390980
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.