140 related articles for article (PubMed ID: 28851357)
1. De novo assembly and characterization of breast cancer transcriptomes identifies large numbers of novel fusion-gene transcripts of potential functional significance.
Mittal VK; McDonald JF
BMC Med Genomics; 2017 Aug; 10(1):53. PubMed ID: 28851357
[TBL] [Abstract][Full Text] [Related]
2. Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification.
Hafstað V; Häkkinen J; Larsson M; Staaf J; Vallon-Christersson J; Persson H
BMC Genomics; 2023 Dec; 24(1):783. PubMed ID: 38110872
[TBL] [Abstract][Full Text] [Related]
3. Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods.
Haas BJ; Dobin A; Li B; Stransky N; Pochet N; Regev A
Genome Biol; 2019 Oct; 20(1):213. PubMed ID: 31639029
[TBL] [Abstract][Full Text] [Related]
4. Transcript-targeted analysis reveals isoform alterations and double-hop fusions in breast cancer.
Namba S; Ueno T; Kojima S; Kobayashi K; Kawase K; Tanaka Y; Inoue S; Kishigami F; Kawashima S; Maeda N; Ogawa T; Hazama S; Togashi Y; Ando M; Shiraishi Y; Mano H; Kawazu M
Commun Biol; 2021 Nov; 4(1):1320. PubMed ID: 34811492
[TBL] [Abstract][Full Text] [Related]
5. Identifying fusion transcripts using next generation sequencing.
Kumar S; Razzaq SK; Vo AD; Gautam M; Li H
Wiley Interdiscip Rev RNA; 2016 Nov; 7(6):811-823. PubMed ID: 27485475
[TBL] [Abstract][Full Text] [Related]
6. GTax: improving de novo transcriptome assembly by removing foreign RNA contamination.
Alvarez RV; Landsman D
Genome Biol; 2024 Jan; 25(1):12. PubMed ID: 38191464
[TBL] [Abstract][Full Text] [Related]
7. Gene expression profiling of human breast tissue samples using SAGE-Seq.
Wu ZJ; Meyer CA; Choudhury S; Shipitsin M; Maruyama R; Bessarabova M; Nikolskaya T; Sukumar S; Schwartzman A; Liu JS; Polyak K; Liu XS
Genome Res; 2010 Dec; 20(12):1730-9. PubMed ID: 21045080
[TBL] [Abstract][Full Text] [Related]
8. Discovery of A Polymorphic Gene Fusion via Bottom-Up Chimeric RNA Prediction.
Elfman J; Goins L; Heller T; Singh S; Wang YH; Li H
bioRxiv; 2023 Feb; ():. PubMed ID: 36778239
[TBL] [Abstract][Full Text] [Related]
9. Discovery of a polymorphic gene fusion via bottom-up chimeric RNA prediction.
Elfman J; Goins L; Heller T; Singh S; Wang YH; Li H
Nucleic Acids Res; 2024 May; 52(8):4409-4421. PubMed ID: 38587197
[TBL] [Abstract][Full Text] [Related]
10. Pan-Cancer Analysis Reveals the Diverse Landscape of Novel Sense and Antisense Fusion Transcripts.
Vellichirammal NN; Albahrani A; Banwait JK; Mishra NK; Li Y; Roychoudhury S; Kling MJ; Mirza S; Bhakat KK; Band V; Joshi SS; Guda C
Mol Ther Nucleic Acids; 2020 Mar; 19():1379-1398. PubMed ID: 32160708
[TBL] [Abstract][Full Text] [Related]
11. Recent advances in the investigation of fusion RNAs and their role in molecular pathology of cancer.
Xu SM; Cheng Y; Fisher H; Janitz M
Int J Biochem Cell Biol; 2024 Mar; 168():106529. PubMed ID: 38246262
[TBL] [Abstract][Full Text] [Related]
12. Effects of transcriptional noise on estimates of gene and transcript expression in RNA sequencing experiments.
Varabyou A; Salzberg SL; Pertea M
Genome Res; 2021 Feb; 31(2):301-308. PubMed ID: 33361112
[TBL] [Abstract][Full Text] [Related]
13. De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech.
Müller M; Seifert S; Lübbe T; Leuschner C; Finkeldey R
PLoS One; 2017; 12(9):e0184167. PubMed ID: 28873454
[TBL] [Abstract][Full Text] [Related]
14. Targeting MAPK Signaling in Cancer: Mechanisms of Drug Resistance and Sensitivity.
Lee S; Rauch J; Kolch W
Int J Mol Sci; 2020 Feb; 21(3):. PubMed ID: 32046099
[TBL] [Abstract][Full Text] [Related]
15. Novel and Rare Fusion Transcripts Involving Transcription Factors and Tumor Suppressor Genes in Acute Myeloid Leukemia.
Padella A; Simonetti G; Paciello G; Giotopoulos G; Baldazzi C; Righi S; Ghetti M; Stengel A; Guadagnuolo V; De Tommaso R; Papayannidis C; Robustelli V; Franchini E; Rorà AGLD; Ferrari A; Fontana MC; Bruno S; Ottaviani E; Soverini S; Storlazzi CT; Haferlach C; Sabattini E; Testoni N; Iacobucci I; Huntly BJP; Ficarra E; Martinelli G
Cancers (Basel); 2019 Dec; 11(12):. PubMed ID: 31817495
[TBL] [Abstract][Full Text] [Related]
16. RNAmut: robust identification of somatic mutations in acute myeloid leukemia using RNA-sequencing.
Gu M; Zwiebel M; Ong SH; Boughton N; Nomdedeu J; Basheer F; Nannya Y; Quiros PM; Ogawa S; Cazzola M; Rad R; Butler AP; Vijayabaskar MS; Vassiliou GS
Haematologica; 2020 Jun; 105(6):e290-e293. PubMed ID: 31649132
[No Abstract] [Full Text] [Related]
17. Identification and Characterization of Novel Fusion Genes with Potential Clinical Applications in Mexican Children with Acute Lymphoblastic Leukemia.
Mata-Rocha M; Rangel-López A; Jiménez-Hernández E; Morales-Castillo BA; González-Torres C; Gaytan-Cervantes J; Álvarez-Olmos E; Núñez-Enríquez JC; Fajardo-Gutiérrez A; Martín-Trejo JA; Solís-Labastida KA; Medina-Sansón A; Flores-Lujano J; Sepúlveda-Robles OA; Peñaloza-González JG; Espinoza-Hernández LE; Núñez-Villegas NN; Espinosa-Elizondo RM; Cortés-Herrera B; Torres-Nava JR; Flores-Villegas LV; Merino-Pasaye LE; Bekker-Méndez VC; Velázquez-Aviña MM; Pérez-Saldívar ML; Bautista-Martínez BA; Amador-Sánchez R; González-Avila AI; Jiménez-Morales S; Duarte-Rodríguez DA; Santillán-Juárez JD; García-Velázquez AJ; Rosas-Vargas H; Mejía-Aranguré JM
Int J Mol Sci; 2019 May; 20(10):. PubMed ID: 31096545
[TBL] [Abstract][Full Text] [Related]
18. Diagnosis of fusion genes using targeted RNA sequencing.
Heyer EE; Deveson IW; Wooi D; Selinger CI; Lyons RJ; Hayes VM; O'Toole SA; Ballinger ML; Gill D; Thomas DM; Mercer TR; Blackburn J
Nat Commun; 2019 Mar; 10(1):1388. PubMed ID: 30918253
[TBL] [Abstract][Full Text] [Related]
19. Using RNA-Seq Data for the Detection of a Panel of Clinically Relevant Mutations.
Wolff A; Perera-Bel J; Schildhaus HU; Homayounfar K; Schatlo B; Bleckmann A; Beißbarth T
Stud Health Technol Inform; 2018; 253():217-221. PubMed ID: 30147077
[TBL] [Abstract][Full Text] [Related]
20. Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data.
Coudray A; Battenhouse AM; Bucher P; Iyer VR
PeerJ; 2018; 6():e5362. PubMed ID: 30083469
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
