BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

281 related articles for article (PubMed ID: 28861891)

  • 1. Improving power of association tests using multiple sets of imputed genotypes from distributed reference panels.
    Zhou W; Fritsche LG; Das S; Zhang H; Nielsen JB; Holmen OL; Chen J; Lin M; Elvestad MB; Hveem K; Abecasis GR; Kang HM; Willer CJ
    Genet Epidemiol; 2017 Dec; 41(8):744-755. PubMed ID: 28861891
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genotype imputation performance of three reference panels using African ancestry individuals.
    Vergara C; Parker MM; Franco L; Cho MH; Valencia-Duarte AV; Beaty TH; Duggal P
    Hum Genet; 2018 Apr; 137(4):281-292. PubMed ID: 29637265
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Rare variant genotype imputation with thousands of study-specific whole-genome sequences: implications for cost-effective study designs.
    Pistis G; Porcu E; Vrieze SI; Sidore C; Steri M; Danjou F; Busonero F; Mulas A; Zoledziewska M; Maschio A; Brennan C; Lai S; Miller MB; Marcelli M; Urru MF; Pitzalis M; Lyons RH; Kang HM; Jones CM; Angius A; Iacono WG; Schlessinger D; McGue M; Cucca F; Abecasis GR; Sanna S
    Eur J Hum Genet; 2015 Jul; 23(7):975-83. PubMed ID: 25293720
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genotype imputation for Han Chinese population using Haplotype Reference Consortium as reference.
    Lin Y; Liu L; Yang S; Li Y; Lin D; Zhang X; Yin X
    Hum Genet; 2018 Jul; 137(6-7):431-436. PubMed ID: 29855708
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.
    Kowalski MH; Qian H; Hou Z; Rosen JD; Tapia AL; Shan Y; Jain D; Argos M; Arnett DK; Avery C; Barnes KC; Becker LC; Bien SA; Bis JC; Blangero J; Boerwinkle E; Bowden DW; Buyske S; Cai J; Cho MH; Choi SH; Choquet H; Cupples LA; Cushman M; Daya M; de Vries PS; Ellinor PT; Faraday N; Fornage M; Gabriel S; Ganesh SK; Graff M; Gupta N; He J; Heckbert SR; Hidalgo B; Hodonsky CJ; Irvin MR; Johnson AD; Jorgenson E; Kaplan R; Kardia SLR; Kelly TN; Kooperberg C; Lasky-Su JA; Loos RJF; Lubitz SA; Mathias RA; McHugh CP; Montgomery C; Moon JY; Morrison AC; Palmer ND; Pankratz N; Papanicolaou GJ; Peralta JM; Peyser PA; Rich SS; Rotter JI; Silverman EK; Smith JA; Smith NL; Taylor KD; Thornton TA; Tiwari HK; Tracy RP; Wang T; Weiss ST; Weng LC; Wiggins KL; Wilson JG; Yanek LR; Zöllner S; North KE; Auer PL; ; ; Raffield LM; Reiner AP; Li Y
    PLoS Genet; 2019 Dec; 15(12):e1008500. PubMed ID: 31869403
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Rare Variants Imputation in Admixed Populations: Comparison Across Reference Panels and Bioinformatics Tools.
    Sariya S; Lee JH; Mayeux R; Vardarajan BN; Reyes-Dumeyer D; Manly JJ; Brickman AM; Lantigua R; Medrano M; Jimenez-Velazquez IZ; Tosto G
    Front Genet; 2019; 10():239. PubMed ID: 31001313
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Haplotype reference consortium panel: Practical implications of imputations with large reference panels.
    Iglesias AI; van der Lee SJ; Bonnemaijer PWM; Höhn R; Nag A; Gharahkhani P; Khawaja AP; Broer L; ; Foster PJ; Hammond CJ; Hysi PG; van Leeuwen EM; MacGregor S; Mackey DA; Mazur J; Nickels S; Uitterlinden AG; Klaver CCW; Amin N; van Duijn CM
    Hum Mutat; 2017 Aug; 38(8):1025-1032. PubMed ID: 28493391
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improving imputation quality in Samoans through the integration of population-specific sequences into existing reference panels.
    Carlson JC; Krishnan M; Liu S; Anderson KJ; Zhang JZ; Yapp TJ; Chiyka EA; Dikec DA; Cheng H; Naseri T; Reupena MS; Viali S; Deka R; Hawley NL; McGarvey ST; Weeks DE; Minster RL
    medRxiv; 2023 Oct; ():. PubMed ID: 37961708
    [TBL] [Abstract][Full Text] [Related]  

  • 9. How local reference panels improve imputation in French populations.
    Herzig AF; Velo-Suárez L; ; ; Dina C; Redon R; Deleuze JF; Génin E
    Sci Rep; 2024 Jan; 14(1):370. PubMed ID: 38172507
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Investigating the accuracy of imputing autosomal variants in Nellore cattle using the ARS-UCD1.2 assembly of the bovine genome.
    Hermisdorff IDC; Costa RB; de Albuquerque LG; Pausch H; Kadri NK
    BMC Genomics; 2020 Nov; 21(1):772. PubMed ID: 33167856
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'.
    Deelen P; Menelaou A; van Leeuwen EM; Kanterakis A; van Dijk F; Medina-Gomez C; Francioli LC; Hottenga JJ; Karssen LC; Estrada K; Kreiner-Møller E; Rivadeneira F; van Setten J; Gutierrez-Achury J; Westra HJ; Franke L; van Enckevort D; Dijkstra M; Byelas H; van Duijn CM; ; de Bakker PI; Wijmenga C; Swertz MA
    Eur J Hum Genet; 2014 Nov; 22(11):1321-6. PubMed ID: 24896149
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel.
    Mitt M; Kals M; Pärn K; Gabriel SB; Lander ES; Palotie A; Ripatti S; Morris AP; Metspalu A; Esko T; Mägi R; Palta P
    Eur J Hum Genet; 2017 Jun; 25(7):869-876. PubMed ID: 28401899
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Extent to which array genotyping and imputation with large reference panels approximate deep whole-genome sequencing.
    Hanks SC; Forer L; Schönherr S; LeFaive J; Martins T; Welch R; Gagliano Taliun SA; Braff D; Johnsen JM; Kenny EE; Konkle BA; Laakso M; Loos RFJ; McCarroll S; Pato C; Pato MT; Smith AV; ; Boehnke M; Scott LJ; Fuchsberger C
    Am J Hum Genet; 2022 Sep; 109(9):1653-1666. PubMed ID: 35981533
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genotype imputation accuracy and the quality metrics of the minor ancestry in multi-ancestry reference panels.
    Shi M; Tanikawa C; Munter HM; Akiyama M; Koyama S; Tomizuka K; Matsuda K; Lathrop GM; Terao C; Koido M; Kamatani Y
    Brief Bioinform; 2023 Nov; 25(1):. PubMed ID: 38221906
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comprehensive evaluation of imputation performance in African Americans.
    Chanda P; Yuhki N; Li M; Bader JS; Hartz A; Boerwinkle E; Kao WH; Arking DE
    J Hum Genet; 2012 Jul; 57(7):411-21. PubMed ID: 22648186
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genotype-imputation accuracy across worldwide human populations.
    Huang L; Li Y; Singleton AB; Hardy JA; Abecasis G; Rosenberg NA; Scheet P
    Am J Hum Genet; 2009 Feb; 84(2):235-50. PubMed ID: 19215730
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inclusion of Population-specific Reference Panel from India to the 1000 Genomes Phase 3 Panel Improves Imputation Accuracy.
    Ahmad M; Sinha A; Ghosh S; Kumar V; Davila S; Yajnik CS; Chandak GR
    Sci Rep; 2017 Jul; 7(1):6733. PubMed ID: 28751670
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Performance of genotype imputation for low frequency and rare variants from the 1000 genomes.
    Zheng HF; Rong JJ; Liu M; Han F; Zhang XW; Richards JB; Wang L
    PLoS One; 2015; 10(1):e0116487. PubMed ID: 25621886
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improving accuracy of rare variant imputation with a two-step imputation approach.
    Kreiner-Møller E; Medina-Gomez C; Uitterlinden AG; Rivadeneira F; Estrada K
    Eur J Hum Genet; 2015 Mar; 23(3):395-400. PubMed ID: 24939589
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Performance of genotype imputation for rare variants identified in exons and flanking regions of genes.
    Li L; Li Y; Browning SR; Browning BL; Slater AJ; Kong X; Aponte JL; Mooser VE; Chissoe SL; Whittaker JC; Nelson MR; Ehm MG
    PLoS One; 2011; 6(9):e24945. PubMed ID: 21949800
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.