These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration. Woodruff LBA; Gorochowski TE; Roehner N; Mikkelsen TS; Densmore D; Gordon DB; Nicol R; Voigt CA Nucleic Acids Res; 2017 Feb; 45(3):1553-1565. PubMed ID: 28007941 [TBL] [Abstract][Full Text] [Related]
3. Engineering Genomes with Genotype Specification Language. Wilson EH; Macklin C; Platt D Methods Mol Biol; 2018; 1772():373-398. PubMed ID: 29754240 [TBL] [Abstract][Full Text] [Related]
4. Optimizing DNA assembly based on statistical language modelling. Fang G; Zhang S; Dong Y Nucleic Acids Res; 2017 Dec; 45(22):e182. PubMed ID: 29036490 [TBL] [Abstract][Full Text] [Related]
5. A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts. Cai Y; Hartnett B; Gustafsson C; Peccoud J Bioinformatics; 2007 Oct; 23(20):2760-7. PubMed ID: 17804435 [TBL] [Abstract][Full Text] [Related]
6. Eugene--a domain specific language for specifying and constraining synthetic biological parts, devices, and systems. Bilitchenko L; Liu A; Cheung S; Weeding E; Xia B; Leguia M; Anderson JC; Densmore D PLoS One; 2011 Apr; 6(4):e18882. PubMed ID: 21559524 [TBL] [Abstract][Full Text] [Related]
7. Genotype Specification Language. Wilson EH; Sagawa S; Weis JW; Schubert MG; Bissell M; Hawthorne B; Reeves CD; Dean J; Platt D ACS Synth Biol; 2016 Jun; 5(6):471-8. PubMed ID: 26886161 [TBL] [Abstract][Full Text] [Related]
8. Molecular biology and genetic engineering in nitrogen fixation. Dos Santos PC Methods Mol Biol; 2011; 766():81-92. PubMed ID: 21833862 [TBL] [Abstract][Full Text] [Related]
9. Functional optimization of gene clusters by combinatorial design and assembly. Smanski MJ; Bhatia S; Zhao D; Park Y; B A Woodruff L; Giannoukos G; Ciulla D; Busby M; Calderon J; Nicol R; Gordon DB; Densmore D; Voigt CA Nat Biotechnol; 2014 Dec; 32(12):1241-9. PubMed ID: 25419741 [TBL] [Abstract][Full Text] [Related]
10. Computationally Optimised DNA Assembly of synthetic genes. Larsen LS; Wassman CD; Hatfield GW; Lathrop RH Int J Bioinform Res Appl; 2008; 4(3):324-36. PubMed ID: 18640907 [TBL] [Abstract][Full Text] [Related]
11. Genetic parts to program bacteria. Voigt CA Curr Opin Biotechnol; 2006 Oct; 17(5):548-57. PubMed ID: 16978856 [TBL] [Abstract][Full Text] [Related]
13. Genetic modification and selection of microorganisms for growth on Mars. Hiscox JA; Thomas DJ J Br Interplanet Soc; 1995 Oct; 48(10):419-26. PubMed ID: 11541203 [TBL] [Abstract][Full Text] [Related]
14. Modeling structure-function relationships in synthetic DNA sequences using attribute grammars. Cai Y; Lux MW; Adam L; Peccoud J PLoS Comput Biol; 2009 Oct; 5(10):e1000529. PubMed ID: 19816554 [TBL] [Abstract][Full Text] [Related]