472 related articles for article (PubMed ID: 28874689)
1. Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology.
Bertoni M; Kiefer F; Biasini M; Bordoli L; Schwede T
Sci Rep; 2017 Sep; 7(1):10480. PubMed ID: 28874689
[TBL] [Abstract][Full Text] [Related]
2. Structural and functional specificity of small heat shock protein HspB1 and HspB4, two cellular partners of HspB5: role of the in vitro hetero-complex formation in chaperone activity.
Skouri-Panet F; Michiel M; Férard C; Duprat E; Finet S
Biochimie; 2012 Apr; 94(4):975-84. PubMed ID: 22210387
[TBL] [Abstract][Full Text] [Related]
3. Comparative analyses of quaternary arrangements in homo-oligomeric proteins in superfamilies: Functional implications.
Sudha G; Srinivasan N
Proteins; 2016 Sep; 84(9):1190-202. PubMed ID: 27177429
[TBL] [Abstract][Full Text] [Related]
4. Modeling of protein complexes in CAPRI Round 37 using template-based approach combined with model selection.
Dapkūnas J; Olechnovič K; Venclovas Č
Proteins; 2018 Mar; 86 Suppl 1():292-301. PubMed ID: 28905467
[TBL] [Abstract][Full Text] [Related]
5. PDB-wide identification of physiological hetero-oligomeric assemblies based on conserved quaternary structure geometry.
Dey S; Levy ED
Structure; 2021 Nov; 29(11):1303-1311.e3. PubMed ID: 34520740
[TBL] [Abstract][Full Text] [Related]
6. GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity.
Lee H; Park H; Ko J; Seok C
Bioinformatics; 2013 Apr; 29(8):1078-80. PubMed ID: 23413437
[TBL] [Abstract][Full Text] [Related]
7. Improving the Accuracy of Fitted Atomic Models in Cryo-EM Density Maps of Protein Assemblies Using Evolutionary Information from Aligned Homologous Proteins.
Rakesh R; Srinivasan N
Methods Mol Biol; 2016; 1415():193-209. PubMed ID: 27115634
[TBL] [Abstract][Full Text] [Related]
8. BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers.
Shapovalov MV; Wang Q; Xu Q; Andrake M; Dunbrack RL
PLoS One; 2014; 9(6):e98309. PubMed ID: 24922057
[TBL] [Abstract][Full Text] [Related]
9. Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.
Lee H; Baek M; Lee GR; Park S; Seok C
Proteins; 2017 Mar; 85(3):399-407. PubMed ID: 27770545
[TBL] [Abstract][Full Text] [Related]
10. Imprint of evolutionary conservation and protein structure variation on the binding function of protein tyrosine kinases.
Verkhivker GM
Bioinformatics; 2006 Aug; 22(15):1846-54. PubMed ID: 16720585
[TBL] [Abstract][Full Text] [Related]
11. Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling.
Meier A; Söding J
PLoS Comput Biol; 2015 Oct; 11(10):e1004343. PubMed ID: 26496371
[TBL] [Abstract][Full Text] [Related]
12. Structural templates for modeling homodimers.
Kundrotas PJ; Vakser IA; Janin J
Protein Sci; 2013 Nov; 22(11):1655-63. PubMed ID: 23996787
[TBL] [Abstract][Full Text] [Related]
13. Predicted binding site information improves model ranking in protein docking using experimental and computer-generated target structures.
Maheshwari S; Brylinski M
BMC Struct Biol; 2015 Nov; 15():23. PubMed ID: 26597230
[TBL] [Abstract][Full Text] [Related]
14. Modeling of Protein Tertiary and Quaternary Structures Based on Evolutionary Information.
Studer G; Tauriello G; Bienert S; Waterhouse AM; Bertoni M; Bordoli L; Schwede T; Lepore R
Methods Mol Biol; 2019; 1851():301-316. PubMed ID: 30298405
[TBL] [Abstract][Full Text] [Related]
15. The challenge of modeling protein assemblies: the CASP12-CAPRI experiment.
Lensink MF; Velankar S; Baek M; Heo L; Seok C; Wodak SJ
Proteins; 2018 Mar; 86 Suppl 1():257-273. PubMed ID: 29127686
[TBL] [Abstract][Full Text] [Related]
16. Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Taly JF; Marin A; Gibrat JF
BMC Bioinformatics; 2008 Jan; 9():6. PubMed ID: 18179702
[TBL] [Abstract][Full Text] [Related]
17. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
Kundrotas PJ; Lensink MF; Alexov E
Int J Biol Macromol; 2008 Aug; 43(2):198-208. PubMed ID: 18572239
[TBL] [Abstract][Full Text] [Related]
18. Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.
Fernandez-Fuentes N; Rai BK; Madrid-Aliste CJ; Fajardo JE; Fiser A
Bioinformatics; 2007 Oct; 23(19):2558-65. PubMed ID: 17823132
[TBL] [Abstract][Full Text] [Related]
19. Brownian dynamics simulations of interactions between aldolase and G- or F-actin.
Ouporov IV; Knull HR; Thomasson KA
Biophys J; 1999 Jan; 76(1 Pt 1):17-27. PubMed ID: 9876119
[TBL] [Abstract][Full Text] [Related]
20. Expanding the nitrogen regulatory protein superfamily: Homology detection at below random sequence identity.
Kinch LN; Grishin NV
Proteins; 2002 Jul; 48(1):75-84. PubMed ID: 12012339
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]