BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

151 related articles for article (PubMed ID: 28877760)

  • 1. SBMLPkgSpec: a LaTeX style file for SBML package specification documents.
    Hucka M
    BMC Res Notes; 2017 Sep; 10(1):451. PubMed ID: 28877760
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
    Hucka M; Bergmann FT; Dräger A; Hoops S; Keating SM; Le Novère N; Myers CJ; Olivier BG; Sahle S; Schaff JC; Smith LP; Waltemath D; Wilkinson DJ
    J Integr Bioinform; 2018 Mar; 15(1):. PubMed ID: 29522418
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
    Hucka M; Bergmann FT; Chaouiya C; Dräger A; Hoops S; Keating SM; König M; Novère NL; Myers CJ; Olivier BG; Sahle S; Schaff JC; Sheriff R; Smith LP; Waltemath D; Wilkinson DJ; Zhang F
    J Integr Bioinform; 2019 Jun; 16(2):. PubMed ID: 31219795
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
    Hucka M; Bergmann FT; Hoops S; Keating SM; Sahle S; Schaff JC; Smith LP; Wilkinson DJ
    J Integr Bioinform; 2015 Sep; 12(2):266. PubMed ID: 26528564
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.
    Smith LP; Moodie SL; Bergmann FT; Gillespie C; Keating SM; König M; Myers CJ; Swat MJ; Wilkinson DJ; Hucka M
    J Integr Bioinform; 2020 Jul; 17(2-3):. PubMed ID: 32750035
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
    Hucka M; Bergmann FT; Dräger A; Hoops S; Keating SM; Le Novère N; Myers CJ; Olivier BG; Sahle S; Schaff JC; Smith LP; Waltemath D; Wilkinson DJ
    J Integr Bioinform; 2015 Sep; 12(2):271. PubMed ID: 26528569
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.
    Zhang F; Smith LP; Blinov ML; Faeder J; Hlavacek WS; Juan Tapia J; Keating SM; Rodriguez N; Dräger A; Harris LA; Finney A; Hu B; Hucka M; Meier-Schellersheim M
    J Integr Bioinform; 2020 Jul; 17(2-3):. PubMed ID: 32628633
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core.
    Gauges R; Rost U; Sahle S; Wengler K; Bergmann FT
    J Integr Bioinform; 2015 Sep; 12(2):267. PubMed ID: 26528565
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SBMLeditor: effective creation of models in the Systems Biology Markup language (SBML).
    Rodriguez N; Donizelli M; Le Novère N
    BMC Bioinformatics; 2007 Mar; 8():79. PubMed ID: 17341299
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
    Hucka M; Finney A; Sauro HM; Bolouri H; Doyle JC; Kitano H; Arkin AP; Bornstein BJ; Bray D; Cornish-Bowden A; Cuellar AA; Dronov S; Gilles ED; Ginkel M; Gor V; Goryanin II; Hedley WJ; Hodgman TC; Hofmeyr JH; Hunter PJ; Juty NS; Kasberger JL; Kremling A; Kummer U; Le Novère N; Loew LM; Lucio D; Mendes P; Minch E; Mjolsness ED; Nakayama Y; Nelson MR; Nielsen PF; Sakurada T; Schaff JC; Shapiro BE; Shimizu TS; Spence HD; Stelling J; Takahashi K; Tomita M; Wagner J; Wang J;
    Bioinformatics; 2003 Mar; 19(4):524-31. PubMed ID: 12611808
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SBMLDiagrams: a python package to process and visualize SBML layout and render.
    Xu J; Jiang J; Sauro HM
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36370074
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SBML export interface for the systems biology toolbox for MATLAB.
    Schmidt H; Drews G; Vera J; Wolkenhauer O
    Bioinformatics; 2007 May; 23(10):1297-8. PubMed ID: 17384017
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SBML to bond graphs: From conversion to composition.
    Shahidi N; Pan M; Tran K; Crampin EJ; Nickerson DP
    Math Biosci; 2022 Oct; 352():108901. PubMed ID: 36096376
    [TBL] [Abstract][Full Text] [Related]  

  • 14. JSBML: a flexible Java library for working with SBML.
    Dräger A; Rodriguez N; Dumousseau M; Dörr A; Wrzodek C; Le Novère N; Zell A; Hucka M
    Bioinformatics; 2011 Aug; 27(15):2167-8. PubMed ID: 21697129
    [TBL] [Abstract][Full Text] [Related]  

  • 15. libAnnotationSBML: a library for exploiting SBML annotations.
    Swainston N; Mendes P
    Bioinformatics; 2009 Sep; 25(17):2292-3. PubMed ID: 19561017
    [TBL] [Abstract][Full Text] [Related]  

  • 16. LibSBML: an API library for SBML.
    Bornstein BJ; Keating SM; Jouraku A; Hucka M
    Bioinformatics; 2008 Mar; 24(6):880-1. PubMed ID: 18252737
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool.
    Zi Z; Zheng Y; Rundell AE; Klipp E
    BMC Bioinformatics; 2008 Aug; 9():342. PubMed ID: 18706080
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SBML2L(A)T(E)X: conversion of SBML files into human-readable reports.
    Dräger A; Planatscher H; Motsou Wouamba D; Schröder A; Hucka M; Endler L; Golebiewski M; Müller W; Zell A
    Bioinformatics; 2009 Jun; 25(11):1455-6. PubMed ID: 19307240
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
    Zi Z; Klipp E
    Bioinformatics; 2006 Nov; 22(21):2704-5. PubMed ID: 16926221
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project.
    Hucka M; Finney A; Bornstein BJ; Keating SM; Shapiro BE; Matthews J; Kovitz BL; Schilstra MJ; Funahashi A; Doyle JC; Kitano H
    Syst Biol (Stevenage); 2004 Jun; 1(1):41-53. PubMed ID: 17052114
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.