These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

135 related articles for article (PubMed ID: 28881971)

  • 1. Modelling haplotypes with respect to reference cohort variation graphs.
    Rosen Y; Eizenga J; Paten B
    Bioinformatics; 2017 Jul; 33(14):i118-i123. PubMed ID: 28881971
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Haplotype-aware graph indexes.
    Sirén J; Garrison E; Novak AM; Paten B; Durbin R
    Bioinformatics; 2020 Jan; 36(2):400-407. PubMed ID: 31406990
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Haplotype assembly in polyploid genomes and identical by descent shared tracts.
    Aguiar D; Istrail S
    Bioinformatics; 2013 Jul; 29(13):i352-60. PubMed ID: 23813004
    [TBL] [Abstract][Full Text] [Related]  

  • 4. BCFtools/csq: haplotype-aware variant consequences.
    Danecek P; McCarthy SA
    Bioinformatics; 2017 Jul; 33(13):2037-2039. PubMed ID: 28205675
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Haplotypes histories as pathways of recombinations.
    El-Mabrouk N; Labuda D
    Bioinformatics; 2004 Aug; 20(12):1836-41. PubMed ID: 14988100
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PEATH: single-individual haplotyping by a probabilistic evolutionary algorithm with toggling.
    Na JC; Lee JC; Rhee JK; Shin SY
    Bioinformatics; 2018 Jun; 34(11):1801-1807. PubMed ID: 29342247
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GTC: how to maintain huge genotype collections in a compressed form.
    Danek A; Deorowicz S
    Bioinformatics; 2018 Jun; 34(11):1834-1840. PubMed ID: 29351600
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A new haplotype block detection method for dense genome sequencing data based on interval graph modeling of clusters of highly correlated SNPs.
    Kim SA; Cho CS; Kim SR; Bull SB; Yoo YJ
    Bioinformatics; 2018 Feb; 34(3):388-397. PubMed ID: 29028986
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BubbleGun: enumerating bubbles and superbubbles in genome graphs.
    Dabbaghie F; Ebler J; Marschall T
    Bioinformatics; 2022 Sep; 38(17):4217-4219. PubMed ID: 35799353
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mapping-free variant calling using haplotype reconstruction from k-mer frequencies.
    Audano PA; Ravishankar S; Vannberg FO
    Bioinformatics; 2018 May; 34(10):1659-1665. PubMed ID: 29186321
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
    Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
    Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ntCard: a streaming algorithm for cardinality estimation in genomics data.
    Mohamadi H; Khan H; Birol I
    Bioinformatics; 2017 May; 33(9):1324-1330. PubMed ID: 28453674
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SAMFIRE: multi-locus variant calling for time-resolved sequence data.
    Illingworth CJ
    Bioinformatics; 2016 Jul; 32(14):2208-9. PubMed ID: 27153641
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification.
    Szpiech ZA; Blant A; Pemberton TJ
    Bioinformatics; 2017 Jul; 33(13):2059-2062. PubMed ID: 28205676
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A variant selection framework for genome graphs.
    Jain C; Tavakoli N; Aluru S
    Bioinformatics; 2021 Jul; 37(Suppl_1):i460-i467. PubMed ID: 34252945
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Accurate estimation of haplotype frequency from pooled sequencing data and cost-effective identification of rare haplotype carriers by overlapping pool sequencing.
    Cao CC; Sun X
    Bioinformatics; 2015 Feb; 31(4):515-22. PubMed ID: 25304780
    [TBL] [Abstract][Full Text] [Related]  

  • 17. GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs.
    Tognon M; Bonnici V; Garrison E; Giugno R; Pinello L
    PLoS Comput Biol; 2021 Sep; 17(9):e1009444. PubMed ID: 34570769
    [TBL] [Abstract][Full Text] [Related]  

  • 18. GppFst: genomic posterior predictive simulations of FST and dXY for identifying outlier loci from population genomic data.
    Adams RH; Schield DR; Card DC; Blackmon H; Castoe TA
    Bioinformatics; 2017 May; 33(9):1414-1415. PubMed ID: 28453670
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
    Bansal V
    Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Fitchi: haplotype genealogy graphs based on the Fitch algorithm.
    Matschiner M
    Bioinformatics; 2016 Apr; 32(8):1250-2. PubMed ID: 26656006
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.