212 related articles for article (PubMed ID: 28881993)
1. Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes.
Nakatani Y; McLysaght A
Bioinformatics; 2017 Jul; 33(14):i369-i378. PubMed ID: 28881993
[TBL] [Abstract][Full Text] [Related]
2. Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates.
Nakatani Y; Takeda H; Kohara Y; Morishita S
Genome Res; 2007 Sep; 17(9):1254-65. PubMed ID: 17652425
[TBL] [Abstract][Full Text] [Related]
3. OHNOLOGS v2: a comprehensive resource for the genes retained from whole genome duplication in vertebrates.
Singh PP; Isambert H
Nucleic Acids Res; 2020 Jan; 48(D1):D724-D730. PubMed ID: 31612943
[TBL] [Abstract][Full Text] [Related]
4. Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.
Kassahn KS; Dang VT; Wilkins SJ; Perkins AC; Ragan MA
Genome Res; 2009 Aug; 19(8):1404-18. PubMed ID: 19439512
[TBL] [Abstract][Full Text] [Related]
5. AliquotG: an improved heuristic algorithm for genome aliquoting.
Chen Z; Huang S; Li Y; Xu A
PLoS One; 2013; 8(5):e64279. PubMed ID: 23691189
[TBL] [Abstract][Full Text] [Related]
6. Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes.
Zheng C; Sankoff D
BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S9. PubMed ID: 22759433
[TBL] [Abstract][Full Text] [Related]
7. Reconstructing the architecture of the ancestral amniote genome.
Ouangraoua A; Tannier E; Chauve C
Bioinformatics; 2011 Oct; 27(19):2664-71. PubMed ID: 21846735
[TBL] [Abstract][Full Text] [Related]
8. A unified ILP framework for core ancestral genome reconstruction problems.
Avdeyev P; Alexeev N; Rong Y; Alekseyev MA
Bioinformatics; 2020 May; 36(10):2993-3003. PubMed ID: 32058559
[TBL] [Abstract][Full Text] [Related]
9. Reconstruction of ancestral gene orders using intermediate genomes.
Feijão P
BMC Bioinformatics; 2015; 16 Suppl 14(Suppl 14):S3. PubMed ID: 26451811
[TBL] [Abstract][Full Text] [Related]
10. Fossilized cell structures identify an ancient origin for the teleost whole-genome duplication.
Davesne D; Friedman M; Schmitt AD; Fernandez V; Carnevale G; Ahlberg PE; Sanchez S; Benson RBJ
Proc Natl Acad Sci U S A; 2021 Jul; 118(30):. PubMed ID: 34301898
[TBL] [Abstract][Full Text] [Related]
11. Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement.
Hufton AL; Groth D; Vingron M; Lehrach H; Poustka AJ; Panopoulou G
Genome Res; 2008 Oct; 18(10):1582-91. PubMed ID: 18625908
[TBL] [Abstract][Full Text] [Related]
12. Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates.
Hoffmann FG; Opazo JC; Storz JF
Mol Biol Evol; 2012 Jan; 29(1):303-12. PubMed ID: 21965344
[TBL] [Abstract][Full Text] [Related]
13. Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution.
Nakatani Y; Shingate P; Ravi V; Pillai NE; Prasad A; McLysaght A; Venkatesh B
Nat Commun; 2021 Jul; 12(1):4489. PubMed ID: 34301952
[TBL] [Abstract][Full Text] [Related]
14. The SCJ Small Parsimony Problem for Weighted Gene Adjacencies.
Luhmann N; Lafond M; Thevenin A; Ouangraoua A; Wittler R; Chauve C
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1364-1373. PubMed ID: 28166504
[TBL] [Abstract][Full Text] [Related]
15. Fast ancestral gene order reconstruction of genomes with unequal gene content.
Feijão P; Araujo E
BMC Bioinformatics; 2016 Nov; 17(Suppl 14):413. PubMed ID: 28185578
[TBL] [Abstract][Full Text] [Related]
16. wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication.
Chen H; Zwaenepoel A; Van de Peer Y
Bioinformatics; 2024 May; 40(5):. PubMed ID: 38632086
[TBL] [Abstract][Full Text] [Related]
17. Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling.
Inoue J; Sato Y; Sinclair R; Tsukamoto K; Nishida M
Proc Natl Acad Sci U S A; 2015 Dec; 112(48):14918-23. PubMed ID: 26578810
[TBL] [Abstract][Full Text] [Related]
18. Impact of whole-genome duplication events on diversification rates in angiosperms.
Landis JB; Soltis DE; Li Z; Marx HE; Barker MS; Tank DC; Soltis PS
Am J Bot; 2018 Mar; 105(3):348-363. PubMed ID: 29719043
[TBL] [Abstract][Full Text] [Related]
19. Genome evolution of the ancient hexaploid
Yan X; Shi G; Sun M; Shan S; Chen R; Li R; Wu S; Zhou Z; Li Y; Liu Z; Hu Y; Liu Z; Soltis PS; Zhang J; Soltis DE; Ning G; Bao M
Proc Natl Acad Sci U S A; 2024 Jun; 121(24):e2319679121. PubMed ID: 38830106
[TBL] [Abstract][Full Text] [Related]
20. Mining the semantics of genome super-blocks to infer ancestral architectures.
Jean G; Sherman DJ; Nikolski M
J Comput Biol; 2009 Sep; 16(9):1267-84. PubMed ID: 19772437
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]