BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

105 related articles for article (PubMed ID: 28885157)

  • 21. Full cyclic coordinate descent: solving the protein loop closure problem in Calpha space.
    Boomsma W; Hamelryck T
    BMC Bioinformatics; 2005 Jun; 6():159. PubMed ID: 15985178
    [TBL] [Abstract][Full Text] [Related]  

  • 22. LOOPER: a molecular mechanics-based algorithm for protein loop prediction.
    Spassov VZ; Flook PK; Yan L
    Protein Eng Des Sel; 2008 Feb; 21(2):91-100. PubMed ID: 18194981
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Maintaining and Enhancing Diversity of Sampled Protein Conformations in Robotics-Inspired Methods.
    Abella JR; Moll M; Kavraki LE
    J Comput Biol; 2018 Jan; 25(1):3-20. PubMed ID: 29035572
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Sampling bottlenecks in de novo protein structure prediction.
    Kim DE; Blum B; Bradley P; Baker D
    J Mol Biol; 2009 Oct; 393(1):249-60. PubMed ID: 19646450
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Fast de novo discovery of low-energy protein loop conformations.
    Wong SWK; Liu JS; Kou SC
    Proteins; 2017 Aug; 85(8):1402-1412. PubMed ID: 28378911
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Structural refinement of protein segments containing secondary structure elements: Local sampling, knowledge-based potentials, and clustering.
    Zhu J; Xie L; Honig B
    Proteins; 2006 Nov; 65(2):463-79. PubMed ID: 16927337
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Scoring functions for de novo protein structure prediction revisited.
    Ngan SC; Hung LH; Liu T; Samudrala R
    Methods Mol Biol; 2008; 413():243-81. PubMed ID: 18075169
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Effective protein conformational sampling based on predicted torsion angles.
    Yang Y; Zhou Y
    J Comput Chem; 2016 Apr; 37(11):976-80. PubMed ID: 26696379
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Heuristic-based tabu search algorithm for folding two-dimensional AB off-lattice model proteins.
    Liu J; Sun Y; Li G; Song B; Huang W
    Comput Biol Chem; 2013 Dec; 47():142-8. PubMed ID: 24077543
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Two-Stage Distance Feature-based Optimization Algorithm for De novo Protein Structure Prediction.
    Zhang GJ; Wang XQ; Ma LF; Wang LJ; Hu J; Zhou XG
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(6):2119-2130. PubMed ID: 31107659
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Sampling realistic protein conformations using local structural bias.
    Hamelryck T; Kent JT; Krogh A
    PLoS Comput Biol; 2006 Sep; 2(9):e131. PubMed ID: 17002495
    [TBL] [Abstract][Full Text] [Related]  

  • 32. TOUCHSTONE II: a new approach to ab initio protein structure prediction.
    Zhang Y; Kolinski A; Skolnick J
    Biophys J; 2003 Aug; 85(2):1145-64. PubMed ID: 12885659
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A de novo protein structure prediction by iterative partition sampling, topology adjustment and residue-level distance deviation optimization.
    Liu J; Zhao KL; He GX; Wang LJ; Zhou XG; Zhang GJ
    Bioinformatics; 2021 Dec; 38(1):99-107. PubMed ID: 34459867
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Rapid knot detection and application to protein structure prediction.
    Khatib F; Weirauch MT; Rohl CA
    Bioinformatics; 2006 Jul; 22(14):e252-9. PubMed ID: 16873480
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Protein structure prediction by all-atom free-energy refinement.
    Verma A; Wenzel W
    BMC Struct Biol; 2007 Mar; 7():12. PubMed ID: 17371594
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A sequential niche multimodal conformational sampling algorithm for protein structure prediction.
    Xia YH; Peng CX; Zhou XG; Zhang GJ
    Bioinformatics; 2021 Dec; 37(23):4357-4365. PubMed ID: 34245242
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A probabilistic and continuous model of protein conformational space for template-free modeling.
    Zhao F; Peng J; Debartolo J; Freed KF; Sosnick TR; Xu J
    J Comput Biol; 2010 Jun; 17(6):783-98. PubMed ID: 20583926
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Application of the multiensemble sampling to the equilibrium folding of proteins.
    Son HS; Kim SY; Lee J; Han KK
    Bioinformatics; 2006 Aug; 22(15):1832-7. PubMed ID: 16766555
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Conserved residue clustering and protein structure prediction.
    Schueler-Furman O; Baker D
    Proteins; 2003 Aug; 52(2):225-35. PubMed ID: 12833546
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Sampling of near-native protein conformations during protein structure refinement using a coarse-grained model, normal modes, and molecular dynamics simulations.
    Stumpff-Kane AW; Maksimiak K; Lee MS; Feig M
    Proteins; 2008 Mar; 70(4):1345-56. PubMed ID: 17876825
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.