BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

378 related articles for article (PubMed ID: 28886744)

  • 21. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
    Benhalevy D; McFarland HL; Sarshad AA; Hafner M
    Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
    Li L; Förstner KU; Chao Y
    Methods Mol Biol; 2018; 1751():171-182. PubMed ID: 29508297
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
    Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
    Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
    [TBL] [Abstract][Full Text] [Related]  

  • 24. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
    Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
    Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Chemical crosslinking enhances RNA immunoprecipitation for efficient identification of binding sites of proteins that photo-crosslink poorly with RNA.
    Patton RD; Sanjeev M; Woodward LA; Mabin JW; Bundschuh R; Singh G
    RNA; 2020 Sep; 26(9):1216-1233. PubMed ID: 32467309
    [TBL] [Abstract][Full Text] [Related]  

  • 26. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
    Danan C; Manickavel S; Hafner M
    Methods Mol Biol; 2022; 2404():167-188. PubMed ID: 34694609
    [TBL] [Abstract][Full Text] [Related]  

  • 27. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
    Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
    J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
    Li Q; Uemura Y; Kawahara Y
    Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
    [TBL] [Abstract][Full Text] [Related]  

  • 29. A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data.
    Li S; Dong F; Wu Y; Zhang S; Zhang C; Liu X; Jiang T; Zeng J
    Nucleic Acids Res; 2017 Aug; 45(14):e129. PubMed ID: 28575488
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Human protein-RNA interaction network is highly stable across mammals.
    Ramakrishnan A; Janga SC
    BMC Genomics; 2019 Dec; 20(Suppl 12):1004. PubMed ID: 31888461
    [TBL] [Abstract][Full Text] [Related]  

  • 31. rMAPS: RNA map analysis and plotting server for alternative exon regulation.
    Park JW; Jung S; Rouchka EC; Tseng YT; Xing Y
    Nucleic Acids Res; 2016 Jul; 44(W1):W333-8. PubMed ID: 27174931
    [TBL] [Abstract][Full Text] [Related]  

  • 32. DO-RIP-seq to quantify RNA binding sites transcriptome-wide.
    Nicholson CO; Friedersdorf MB; Bisogno LS; Keene JD
    Methods; 2017 Apr; 118-119():16-23. PubMed ID: 27840290
    [TBL] [Abstract][Full Text] [Related]  

  • 33. SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.
    Brannan KW; Jin W; Huelga SC; Banks CA; Gilmore JM; Florens L; Washburn MP; Van Nostrand EL; Pratt GA; Schwinn MK; Daniels DL; Yeo GW
    Mol Cell; 2016 Oct; 64(2):282-293. PubMed ID: 27720645
    [TBL] [Abstract][Full Text] [Related]  

  • 34. PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks.
    Lin J; Zhang Y; Frankel WN; Ouyang Z
    PLoS Comput Biol; 2019 Aug; 15(8):e1007227. PubMed ID: 31425505
    [TBL] [Abstract][Full Text] [Related]  

  • 35. SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.
    Dotu I; Adamson SI; Coleman B; Fournier C; Ricart-Altimiras E; Eyras E; Chuang JH
    PLoS Comput Biol; 2018 Mar; 14(3):e1006078. PubMed ID: 29596423
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Six GU-rich (6GU
    Takeda JI; Masuda A; Ohno K
    Gene; 2017 Jun; 618():57-64. PubMed ID: 28392367
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Identification of RNA-RBP Interactions in Subcellular Compartments by CLIP-Seq.
    Sahadevan S; Pérez-Berlanga M; Polymenidou M
    Methods Mol Biol; 2022; 2428():305-323. PubMed ID: 35171488
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Genome-Wide Profiling of RNA-Protein Interactions Using CLIP-Seq.
    Stork C; Zheng S
    Methods Mol Biol; 2016; 1421():137-51. PubMed ID: 26965263
    [TBL] [Abstract][Full Text] [Related]  

  • 39. CLIP-Seq in Bacteria: Global Recognition Patterns of Bacterial RNA-Binding Proteins.
    Andresen L; Holmqvist E
    Methods Enzymol; 2018; 612():127-145. PubMed ID: 30502939
    [TBL] [Abstract][Full Text] [Related]  

  • 40. SpyCLIP: an easy-to-use and high-throughput compatible CLIP platform for the characterization of protein-RNA interactions with high accuracy.
    Zhao Y; Zhang Y; Teng Y; Liu K; Liu Y; Li W; Wu L
    Nucleic Acids Res; 2019 Apr; 47(6):e33. PubMed ID: 30715466
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 19.