BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1323 related articles for article (PubMed ID: 28894102)

  • 1. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.
    Parks DH; Rinke C; Chuvochina M; Chaumeil PA; Woodcroft BJ; Evans PN; Hugenholtz P; Tyson GW
    Nat Microbiol; 2017 Nov; 2(11):1533-1542. PubMed ID: 28894102
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Towards a balanced view of the bacterial tree of life.
    Schulz F; Eloe-Fadrosh EA; Bowers RM; Jarett J; Nielsen T; Ivanova NN; Kyrpides NC; Woyke T
    Microbiome; 2017 Oct; 5(1):140. PubMed ID: 29041958
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Insights into the phylogeny and coding potential of microbial dark matter.
    Rinke C; Schwientek P; Sczyrba A; Ivanova NN; Anderson IJ; Cheng JF; Darling A; Malfatti S; Swan BK; Gies EA; Dodsworth JA; Hedlund BP; Tsiamis G; Sievert SM; Liu WT; Eisen JA; Hallam SJ; Kyrpides NC; Stepanauskas R; Rubin EM; Hugenholtz P; Woyke T
    Nature; 2013 Jul; 499(7459):431-7. PubMed ID: 23851394
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life.
    Castelle CJ; Banfield JF
    Cell; 2018 Mar; 172(6):1181-1197. PubMed ID: 29522741
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery.
    Stewart RD; Auffret MD; Warr A; Walker AW; Roehe R; Watson M
    Nat Biotechnol; 2019 Aug; 37(8):953-961. PubMed ID: 31375809
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evaluating
    Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
    Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A genomic catalog of Earth's microbiomes.
    Nayfach S; Roux S; Seshadri R; Udwary D; Varghese N; Schulz F; Wu D; Paez-Espino D; Chen IM; Huntemann M; Palaniappan K; Ladau J; Mukherjee S; Reddy TBK; Nielsen T; Kirton E; Faria JP; Edirisinghe JN; Henry CS; Jungbluth SP; Chivian D; Dehal P; Wood-Charlson EM; Arkin AP; Tringe SG; Visel A; ; Woyke T; Mouncey NJ; Ivanova NN; Kyrpides NC; Eloe-Fadrosh EA
    Nat Biotechnol; 2021 Apr; 39(4):499-509. PubMed ID: 33169036
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia.
    Wilkins LGE; Ettinger CL; Jospin G; Eisen JA
    Sci Rep; 2019 Feb; 9(1):3059. PubMed ID: 30816235
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Metagenomics uncovers gaps in amplicon-based detection of microbial diversity.
    Eloe-Fadrosh EA; Ivanova NN; Woyke T; Kyrpides NC
    Nat Microbiol; 2016 Feb; 1():15032. PubMed ID: 27572438
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments.
    Dombrowski N; Seitz KW; Teske AP; Baker BJ
    Microbiome; 2017 Aug; 5(1):106. PubMed ID: 28835260
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.
    Wu M; Scott AJ
    Bioinformatics; 2012 Apr; 28(7):1033-4. PubMed ID: 22332237
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.
    Asnicar F; Thomas AM; Beghini F; Mengoni C; Manara S; Manghi P; Zhu Q; Bolzan M; Cumbo F; May U; Sanders JG; Zolfo M; Kopylova E; Pasolli E; Knight R; Mirarab S; Huttenhower C; Segata N
    Nat Commun; 2020 May; 11(1):2500. PubMed ID: 32427907
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
    Parks DH; Imelfort M; Skennerton CT; Hugenholtz P; Tyson GW
    Genome Res; 2015 Jul; 25(7):1043-55. PubMed ID: 25977477
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy.
    Parks DH; Chuvochina M; Rinke C; Mussig AJ; Chaumeil PA; Hugenholtz P
    Nucleic Acids Res; 2022 Jan; 50(D1):D785-D794. PubMed ID: 34520557
    [TBL] [Abstract][Full Text] [Related]  

  • 15. uBin: A manual refining tool for genomes from metagenomes.
    Bornemann TLV; Esser SP; Stach TL; Burg T; Probst AJ
    Environ Microbiol; 2023 Jun; 25(6):1077-1083. PubMed ID: 36764661
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome.
    Dudek NK; Sun CL; Burstein D; Kantor RS; Aliaga Goltsman DS; Bik EM; Thomas BC; Banfield JF; Relman DA
    Curr Biol; 2017 Dec; 27(24):3752-3762.e6. PubMed ID: 29153320
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Resolving prokaryotic taxonomy without rRNA: longer oligonucleotide word lengths improve genome and metagenome taxonomic classification.
    Alsop EB; Raymond J
    PLoS One; 2013; 8(7):e67337. PubMed ID: 23840870
    [TBL] [Abstract][Full Text] [Related]  

  • 18. VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes.
    Espinoza JL; Dupont CL
    BMC Bioinformatics; 2022 Oct; 23(1):419. PubMed ID: 36224545
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
    Wu D; Hugenholtz P; Mavromatis K; Pukall R; Dalin E; Ivanova NN; Kunin V; Goodwin L; Wu M; Tindall BJ; Hooper SD; Pati A; Lykidis A; Spring S; Anderson IJ; D'haeseleer P; Zemla A; Singer M; Lapidus A; Nolan M; Copeland A; Han C; Chen F; Cheng JF; Lucas S; Kerfeld C; Lang E; Gronow S; Chain P; Bruce D; Rubin EM; Kyrpides NC; Klenk HP; Eisen JA
    Nature; 2009 Dec; 462(7276):1056-60. PubMed ID: 20033048
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities.
    Danczak RE; Johnston MD; Kenah C; Slattery M; Wrighton KC; Wilkins MJ
    Microbiome; 2017 Sep; 5(1):112. PubMed ID: 28865481
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 67.