These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

96 related articles for article (PubMed ID: 28899099)

  • 1. Accurately Modeling the Conformational Preferences of Nucleosides.
    Burai Patrascu M; Malek-Adamian E; Damha MJ; Moitessier N
    J Am Chem Soc; 2017 Oct; 139(39):13620-13623. PubMed ID: 28899099
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Efficient and Accurate Potential Energy Surfaces of Puckering in Sugar-Modified Nucleosides.
    Mattelaer CA; Mattelaer HP; Rihon J; Froeyen M; Lescrinier E
    J Chem Theory Comput; 2021 Jun; 17(6):3814-3823. PubMed ID: 34000809
    [TBL] [Abstract][Full Text] [Related]  

  • 3. [Analysis of Conformational Features of Watson-Crick Duplex Fragments by Molecular Mechanics and Quantum Mechanics Methods].
    Poltev VI; Anisimov VM; Sanchez C; Deriabina A; Gonzalez E; Garcia D; Rivas F; Polteva NA
    Biofizika; 2016; 61(2):259-69. PubMed ID: 27192827
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Benchmark quantum-chemical calculations on a complete set of rotameric families of the DNA sugar-phosphate backbone and their comparison with modern density functional theory.
    Mládek A; Krepl M; Svozil D; Cech P; Otyepka M; Banáš P; Zgarbová M; Jurečka P; Sponer J
    Phys Chem Chem Phys; 2013 May; 15(19):7295-310. PubMed ID: 23575975
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pseudobond parameters for QM/MM studies involving nucleosides, nucleotides, and their analogs.
    Chaudret R; Parks JM; Yang W
    J Chem Phys; 2013 Jan; 138(4):045102. PubMed ID: 23387624
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Conformations of Cyclobut-A and Cyclobut-G: structural resemblance to nucleosides and incorporation into double helical DNA.
    Rao SN
    J Biomol Struct Dyn; 1992 Feb; 9(4):719-32. PubMed ID: 1616627
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Synthesis and structure of novel conformationally constrained 1',2'-azetidine-fused bicyclic pyrimidine nucleosides: their incorporation into oligo-DNAs and thermal stability of the heteroduplexes.
    Honcharenko D; Varghese OP; Plashkevych O; Barman J; Chattopadhyaya J
    J Org Chem; 2006 Jan; 71(1):299-314. PubMed ID: 16388649
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Conformational states of 2'-C-methylpyrimidine nucleosides in single and double nucleic acid stranded structures.
    Robaldo L; Pontiggia R; Di Lella S; Estrin DA; Engels JW; Iribarren AM; Montserrat JM
    J Phys Chem B; 2013 Jan; 117(1):57-69. PubMed ID: 23240558
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Conformational preferences of modified nucleoside N(2)-methylguanosine (m(2)G) and its derivative N(2), N(2)-dimethylguanosine (m(2)(2)G) occur at 26th position (hinge region) in tRNA.
    Bavi RS; Kamble AD; Kumbhar NM; Kumbhar BV; Sonawane KD
    Cell Biochem Biophys; 2011 Dec; 61(3):507-21. PubMed ID: 21735129
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Intrinsic conformational energetics associated with the glycosyl torsion in DNA: a quantum mechanical study.
    Foloppe N; Hartmann B; Nilsson L; MacKerell AD
    Biophys J; 2002 Mar; 82(3):1554-69. PubMed ID: 11867468
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PROSIT: pseudo-rotational online service and interactive tool, applied to a conformational survey of nucleosides and nucleotides.
    Sun G; Voigt JH; Filippov IV; Marquez VE; Nicklaus MC
    J Chem Inf Comput Sci; 2004; 44(5):1752-62. PubMed ID: 15446834
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Stereochemical studies on nucleic acid analogues. I. Conformations of alpha-nucleosides and alpha-nucleotides: interconversion of sugar puckers via O4'-exo.
    Latha YS; Yathindra N
    Biopolymers; 1992 Mar; 32(3):249-69. PubMed ID: 1581546
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Ab initio conformational analysis of nucleic acid components: intrinsic energetic contributions to nucleic acid structure and dynamics.
    Foloppe N; Nilsson L; MacKerell AD
    Biopolymers; 2001-2002; 61(1):61-76. PubMed ID: 11891629
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Quantum mechanics/molecular mechanics minimum free-energy path for accurate reaction energetics in solution and enzymes: sequential sampling and optimization on the potential of mean force surface.
    Hu H; Lu Z; Parks JM; Burger SK; Yang W
    J Chem Phys; 2008 Jan; 128(3):034105. PubMed ID: 18205486
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Synthesis and structural studies of S-type/N-type-locked/frozen nucleoside analogues and their incorporation in RNA-selective, nuclease resistant 2'-5' linked oligonucleotides.
    Erande N; Gunjal AD; Fernandes M; Gonnade R; Kumar VA
    Org Biomol Chem; 2013 Feb; 11(5):746-57. PubMed ID: 23223853
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Thermodynamic cycle between DNA and RNA constituents for conformation of the sugar ring from nuclear magnetic resonance study.
    Remin M
    J Biomol Struct Dyn; 1997 Oct; 15(2):251-64. PubMed ID: 9399153
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Conformational studies of nucleic acids. II. The conformational energetics of commonly occurring nucleosides.
    Pearlman DA; Kim SH
    J Biomol Struct Dyn; 1985 Aug; 3(1):99-125. PubMed ID: 3917020
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Towards a Better Understanding of Computational Models for Predicting DNA Methylation Effects at the Molecular Level.
    Proctor NK; Ertan-Bolelli T; Bolelli K; Taylor EW; Chiu NHL; Bowen JP
    Curr Top Med Chem; 2020; 20(10):901-909. PubMed ID: 32101127
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Effect of Watson-Crick and Hoogsteen base pairing on the conformational stability of C8-phenoxyl-2'-deoxyguanosine adducts.
    Millen AL; Churchill CD; Manderville RA; Wetmore SD
    J Phys Chem B; 2010 Oct; 114(40):12995-3004. PubMed ID: 20853889
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The conformational study of two carbocyclic nucleosides: why carbocyclic nucleic acids (CarNAs) form more stable duplexes with RNA than DNA does.
    Xu Y; Kino K; Sugiyama H
    J Biomol Struct Dyn; 2002 Dec; 20(3):437-46. PubMed ID: 12437382
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.