BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

2217 related articles for article (PubMed ID: 28903732)

  • 1. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
    Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
    BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
    Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
    J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
    Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
    BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bioinformatic strategies to address limitations of 16rRNA short-read amplicons from different sequencing platforms.
    Bailén M; Bressa C; Larrosa M; González-Soltero R
    J Microbiol Methods; 2020 Feb; 169():105811. PubMed ID: 31857143
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.
    Franzén O; Hu J; Bao X; Itzkowitz SH; Peter I; Bashir A
    Microbiome; 2015 Oct; 3():43. PubMed ID: 26434730
    [TBL] [Abstract][Full Text] [Related]  

  • 6. [Comparison of gut microbiotal compositional analysis of patients with irritable bowel syndrome through different bioinformatics pipelines].
    Zhu SW; Liu ZJ; Li M; Zhu HQ; Duan LP
    Beijing Da Xue Xue Bao Yi Xue Ban; 2018 Apr; 50(2):231-238. PubMed ID: 29643520
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products.
    Xue Z; Kable ME; Marco ML
    mSphere; 2018 Oct; 3(5):. PubMed ID: 30333179
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.
    de Muinck EJ; Trosvik P; Gilfillan GD; Hov JR; Sundaram AYM
    Microbiome; 2017 Jul; 5(1):68. PubMed ID: 28683838
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparison of iSeq and MiSeq as the two platforms for 16S rRNA sequencing in the study of the gut of rat microbiome.
    Salamon D; Zapała B; Krawczyk A; Potasiewicz A; Nikiforuk A; Stój A; Gosiewski T
    Appl Microbiol Biotechnol; 2022 Nov; 106(22):7671-7681. PubMed ID: 36322250
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions.
    Lima J; Manning T; Rutherford KM; Baima ET; Dewhurst RJ; Walsh P; Roehe R
    J Microbiol Methods; 2021 Jul; 186():106235. PubMed ID: 33974954
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
    Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
    Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys.
    Nelson MC; Morrison HG; Benjamino J; Grim SL; Graf J
    PLoS One; 2014; 9(4):e94249. PubMed ID: 24722003
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
    Wagner J; Coupland P; Browne HP; Lawley TD; Francis SC; Parkhill J
    BMC Microbiol; 2016 Nov; 16(1):274. PubMed ID: 27842515
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
    Myer PR; Kim M; Freetly HC; Smith TPL
    J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the illumina platform.
    Sinclair L; Osman OA; Bertilsson S; Eiler A
    PLoS One; 2015; 10(2):e0116955. PubMed ID: 25647581
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.
    Thorsen J; Brejnrod A; Mortensen M; Rasmussen MA; Stokholm J; Al-Soud WA; Sørensen S; Bisgaard H; Waage J
    Microbiome; 2016 Nov; 4(1):62. PubMed ID: 27884206
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling.
    Thomas AM; Jesus EC; Lopes A; Aguiar S; Begnami MD; Rocha RM; Carpinetti PA; Camargo AA; Hoffmann C; Freitas HC; Silva IT; Nunes DN; Setubal JC; Dias-Neto E
    Front Cell Infect Microbiol; 2016; 6():179. PubMed ID: 28018861
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.
    Ranjan R; Rani A; Metwally A; McGee HS; Perkins DL
    Biochem Biophys Res Commun; 2016 Jan; 469(4):967-77. PubMed ID: 26718401
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing.
    Shin J; Lee S; Go MJ; Lee SY; Kim SC; Lee CH; Cho BK
    Sci Rep; 2016 Jul; 6():29681. PubMed ID: 27411898
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities.
    Schriefer AE; Cliften PF; Hibberd MC; Sawyer C; Brown-Kennerly V; Burcea L; Klotz E; Crosby SD; Gordon JI; Head RD
    J Microbiol Methods; 2018 Nov; 154():6-13. PubMed ID: 30273610
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 111.