These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
261 related articles for article (PubMed ID: 28904383)
1. Effects of Coarse Graining and Saturation of Hydrocarbon Chains on Structure and Dynamics of Simulated Lipid Molecules. Buslaev P; Gushchin I Sci Rep; 2017 Sep; 7(1):11476. PubMed ID: 28904383 [TBL] [Abstract][Full Text] [Related]
2. Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites. Rzepiela AJ; Louhivuori M; Peter C; Marrink SJ Phys Chem Chem Phys; 2011 Jun; 13(22):10437-48. PubMed ID: 21494747 [TBL] [Abstract][Full Text] [Related]
3. Capturing Phase Behavior of Ternary Lipid Mixtures with a Refined Martini Coarse-Grained Force Field. Carpenter TS; López CA; Neale C; Montour C; Ingólfsson HI; Di Natale F; Lightstone FC; Gnanakaran S J Chem Theory Comput; 2018 Nov; 14(11):6050-6062. PubMed ID: 30253091 [TBL] [Abstract][Full Text] [Related]
5. Principal Component Analysis of Lipid Molecule Conformational Changes in Molecular Dynamics Simulations. Buslaev P; Gordeliy V; Grudinin S; Gushchin I J Chem Theory Comput; 2016 Mar; 12(3):1019-28. PubMed ID: 26765212 [TBL] [Abstract][Full Text] [Related]
6. Configurational entropies of lipids in pure and mixed bilayers from atomic-level and coarse-grained molecular dynamics simulations. Baron R; de Vries AH; Hünenberger PH; van Gunsteren WF J Phys Chem B; 2006 Aug; 110(31):15602-14. PubMed ID: 16884285 [TBL] [Abstract][Full Text] [Related]
7. Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence. Davtyan A; Dama JF; Voth GA; Andersen HC J Chem Phys; 2015 Apr; 142(15):154104. PubMed ID: 25903863 [TBL] [Abstract][Full Text] [Related]
8. Coarse-Graining Waters: Unveiling The Effective Hydrophilicity/Hydrophobicity of Individual Protein Atoms and The Roles of Waters' Hydrogens. Na H; Song G J Chem Theory Comput; 2023 Oct; 19(20):7307-7323. PubMed ID: 37782694 [TBL] [Abstract][Full Text] [Related]
9. Hybrid All-Atom/Coarse-Grained Simulations of Proteins by Direct Coupling of CHARMM and PRIMO Force Fields. Kar P; Feig M J Chem Theory Comput; 2017 Nov; 13(11):5753-5765. PubMed ID: 28992696 [TBL] [Abstract][Full Text] [Related]
10. Water Defect and Pore Formation in Atomistic and Coarse-Grained Lipid Membranes: Pushing the Limits of Coarse Graining. Bennett WF; Tieleman DP J Chem Theory Comput; 2011 Sep; 7(9):2981-8. PubMed ID: 26605486 [TBL] [Abstract][Full Text] [Related]
11. Effect of Force Field Resolution on Membrane Mechanical Response and Mechanoporation Damage under Deformation Simulations. Vo ATN; Murphy MA; Phan PK; Prabhu RK; Stone TW Mol Biotechnol; 2024 Apr; 66(4):865-875. PubMed ID: 37016179 [TBL] [Abstract][Full Text] [Related]
12. Coarse-grained bond and angle distributions from atomistic simulations: On the systematic parameterisation of lipid models. Genheden S J Mol Graph Model; 2016 Jan; 63():57-64. PubMed ID: 26655333 [TBL] [Abstract][Full Text] [Related]
13. Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel. Shi Q; Izvekov S; Voth GA J Phys Chem B; 2006 Aug; 110(31):15045-8. PubMed ID: 16884212 [TBL] [Abstract][Full Text] [Related]
14. Coarse-Grained Molecular Dynamics Force-Field for Polyacrylamide in Infinite Dilution Derived from Iterative Boltzmann Inversion and MARTINI Force-Field. Banerjee P; Roy S; Nair N J Phys Chem B; 2018 Feb; 122(4):1516-1524. PubMed ID: 29278334 [TBL] [Abstract][Full Text] [Related]
15. The CUMULUS coarse graining method: transferable potentials for water and solutes. van Hoof B; Markvoort AJ; van Santen RA; Hilbers PA J Phys Chem B; 2011 Aug; 115(33):10001-12. PubMed ID: 21740053 [TBL] [Abstract][Full Text] [Related]
17. Coarse-Grained Force Fields from the Perspective of Statistical Mechanics: Better Understanding of the Origins of a MARTINI Hangover. Jarin Z; Newhouse J; Voth GA J Chem Theory Comput; 2021 Feb; 17(2):1170-1180. PubMed ID: 33475352 [TBL] [Abstract][Full Text] [Related]
18. Toward a Coarse Graining/All Atoms Force Field (CG/AA) from a Multiscale Optimization Method: An Application to the MCM-41 Mesoporous Silicates. Ghoufi A; Morineau D; Lefort R; Malfreyt P J Chem Theory Comput; 2010 Oct; 6(10):3212-22. PubMed ID: 26616783 [TBL] [Abstract][Full Text] [Related]
19. Insight into the Properties of Cardiolipin Containing Bilayers from Molecular Dynamics Simulations, Using a Hybrid All-Atom/United-Atom Force Field. Aguayo D; González-Nilo FD; Chipot C J Chem Theory Comput; 2012 May; 8(5):1765-73. PubMed ID: 26593668 [TBL] [Abstract][Full Text] [Related]
20. Effective force coarse-graining. Wang Y; Noid WG; Liu P; Voth GA Phys Chem Chem Phys; 2009 Mar; 11(12):2002-15. PubMed ID: 19280011 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]