These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
286 related articles for article (PubMed ID: 28905467)
1. Modeling of protein complexes in CAPRI Round 37 using template-based approach combined with model selection. Dapkūnas J; Olechnovič K; Venclovas Č Proteins; 2018 Mar; 86 Suppl 1():292-301. PubMed ID: 28905467 [TBL] [Abstract][Full Text] [Related]
2. The challenge of modeling protein assemblies: the CASP12-CAPRI experiment. Lensink MF; Velankar S; Baek M; Heo L; Seok C; Wodak SJ Proteins; 2018 Mar; 86 Suppl 1():257-273. PubMed ID: 29127686 [TBL] [Abstract][Full Text] [Related]
3. Template-Based Modeling of Protein Complexes Using the PPI3D Web Server. Dapkūnas J; Venclovas Č Methods Mol Biol; 2020; 2165():139-155. PubMed ID: 32621223 [TBL] [Abstract][Full Text] [Related]
4. Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction. Dapkūnas J; Olechnovič K; Venclovas Č Proteins; 2021 Dec; 89(12):1834-1843. PubMed ID: 34176161 [TBL] [Abstract][Full Text] [Related]
5. Template-based modeling of diverse protein interactions in CAPRI rounds 38-45. Dapkūnas J; Kairys V; Olechnovič K; Venclovas Č Proteins; 2020 Aug; 88(8):939-947. PubMed ID: 31697420 [TBL] [Abstract][Full Text] [Related]
6. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions. Pallara C; Jiménez-García B; Romero M; Moal IH; Fernández-Recio J Proteins; 2017 Mar; 85(3):487-496. PubMed ID: 27701776 [TBL] [Abstract][Full Text] [Related]
7. Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions. Peterson LX; Shin WH; Kim H; Kihara D Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):311-320. PubMed ID: 28845596 [TBL] [Abstract][Full Text] [Related]
8. Structural modeling of protein complexes: Current capabilities and challenges. Dapkūnas J; Olechnovič K; Venclovas Č Proteins; 2019 Dec; 87(12):1222-1232. PubMed ID: 31294859 [TBL] [Abstract][Full Text] [Related]
9. Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment. Lensink MF; Velankar S; Kryshtafovych A; Huang SY; Schneidman-Duhovny D; Sali A; Segura J; Fernandez-Fuentes N; Viswanath S; Elber R; Grudinin S; Popov P; Neveu E; Lee H; Baek M; Park S; Heo L; Rie Lee G; Seok C; Qin S; Zhou HX; Ritchie DW; Maigret B; Devignes MD; Ghoorah A; Torchala M; Chaleil RA; Bates PA; Ben-Zeev E; Eisenstein M; Negi SS; Weng Z; Vreven T; Pierce BG; Borrman TM; Yu J; Ochsenbein F; Guerois R; Vangone A; Rodrigues JP; van Zundert G; Nellen M; Xue L; Karaca E; Melquiond AS; Visscher K; Kastritis PL; Bonvin AM; Xu X; Qiu L; Yan C; Li J; Ma Z; Cheng J; Zou X; Shen Y; Peterson LX; Kim HR; Roy A; Han X; Esquivel-Rodriguez J; Kihara D; Yu X; Bruce NJ; Fuller JC; Wade RC; Anishchenko I; Kundrotas PJ; Vakser IA; Imai K; Yamada K; Oda T; Nakamura T; Tomii K; Pallara C; Romero-Durana M; Jiménez-García B; Moal IH; Férnandez-Recio J; Joung JY; Kim JY; Joo K; Lee J; Kozakov D; Vajda S; Mottarella S; Hall DR; Beglov D; Mamonov A; Xia B; Bohnuud T; Del Carpio CA; Ichiishi E; Marze N; Kuroda D; Roy Burman SS; Gray JJ; Chermak E; Cavallo L; Oliva R; Tovchigrechko A; Wodak SJ Proteins; 2016 Sep; 84 Suppl 1(Suppl Suppl 1):323-48. PubMed ID: 27122118 [TBL] [Abstract][Full Text] [Related]
10. VoroMQA web server for assessing three-dimensional structures of proteins and protein complexes. Olechnovič K; Venclovas Č Nucleic Acids Res; 2019 Jul; 47(W1):W437-W442. PubMed ID: 31073605 [TBL] [Abstract][Full Text] [Related]
11. Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment. Lensink MF; Brysbaert G; Mauri T; Nadzirin N; Velankar S; Chaleil RAG; Clarence T; Bates PA; Kong R; Liu B; Yang G; Liu M; Shi H; Lu X; Chang S; Roy RS; Quadir F; Liu J; Cheng J; Antoniak A; Czaplewski C; Giełdoń A; Kogut M; Lipska AG; Liwo A; Lubecka EA; Maszota-Zieleniak M; Sieradzan AK; Ślusarz R; Wesołowski PA; Zięba K; Del Carpio Muñoz CA; Ichiishi E; Harmalkar A; Gray JJ; Bonvin AMJJ; Ambrosetti F; Vargas Honorato R; Jandova Z; Jiménez-García B; Koukos PI; Van Keulen S; Van Noort CW; Réau M; Roel-Touris J; Kotelnikov S; Padhorny D; Porter KA; Alekseenko A; Ignatov M; Desta I; Ashizawa R; Sun Z; Ghani U; Hashemi N; Vajda S; Kozakov D; Rosell M; Rodríguez-Lumbreras LA; Fernandez-Recio J; Karczynska A; Grudinin S; Yan Y; Li H; Lin P; Huang SY; Christoffer C; Terashi G; Verburgt J; Sarkar D; Aderinwale T; Wang X; Kihara D; Nakamura T; Hanazono Y; Gowthaman R; Guest JD; Yin R; Taherzadeh G; Pierce BG; Barradas-Bautista D; Cao Z; Cavallo L; Oliva R; Sun Y; Zhu S; Shen Y; Park T; Woo H; Yang J; Kwon S; Won J; Seok C; Kiyota Y; Kobayashi S; Harada Y; Takeda-Shitaka M; Kundrotas PJ; Singh A; Vakser IA; Dapkūnas J; Olechnovič K; Venclovas Č; Duan R; Qiu L; Xu X; Zhang S; Zou X; Wodak SJ Proteins; 2021 Dec; 89(12):1800-1823. PubMed ID: 34453465 [TBL] [Abstract][Full Text] [Related]
12. Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30. Lee H; Baek M; Lee GR; Park S; Seok C Proteins; 2017 Mar; 85(3):399-407. PubMed ID: 27770545 [TBL] [Abstract][Full Text] [Related]
13. Modeling CAPRI targets 110-120 by template-based and free docking using contact potential and combined scoring function. Kundrotas PJ; Anishchenko I; Badal VD; Das M; Dauzhenka T; Vakser IA Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):302-310. PubMed ID: 28905425 [TBL] [Abstract][Full Text] [Related]
15. Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment. Lensink MF; Brysbaert G; Nadzirin N; Velankar S; Chaleil RAG; Gerguri T; Bates PA; Laine E; Carbone A; Grudinin S; Kong R; Liu RR; Xu XM; Shi H; Chang S; Eisenstein M; Karczynska A; Czaplewski C; Lubecka E; Lipska A; Krupa P; Mozolewska M; Golon Ł; Samsonov S; Liwo A; Crivelli S; Pagès G; Karasikov M; Kadukova M; Yan Y; Huang SY; Rosell M; Rodríguez-Lumbreras LA; Romero-Durana M; Díaz-Bueno L; Fernandez-Recio J; Christoffer C; Terashi G; Shin WH; Aderinwale T; Maddhuri Venkata Subraman SR; Kihara D; Kozakov D; Vajda S; Porter K; Padhorny D; Desta I; Beglov D; Ignatov M; Kotelnikov S; Moal IH; Ritchie DW; Chauvot de Beauchêne I; Maigret B; Devignes MD; Ruiz Echartea ME; Barradas-Bautista D; Cao Z; Cavallo L; Oliva R; Cao Y; Shen Y; Baek M; Park T; Woo H; Seok C; Braitbard M; Bitton L; Scheidman-Duhovny D; Dapkūnas J; Olechnovič K; Venclovas Č; Kundrotas PJ; Belkin S; Chakravarty D; Badal VD; Vakser IA; Vreven T; Vangaveti S; Borrman T; Weng Z; Guest JD; Gowthaman R; Pierce BG; Xu X; Duan R; Qiu L; Hou J; Ryan Merideth B; Ma Z; Cheng J; Zou X; Koukos PI; Roel-Touris J; Ambrosetti F; Geng C; Schaarschmidt J; Trellet ME; Melquiond ASJ; Xue L; Jiménez-García B; van Noort CW; Honorato RV; Bonvin AMJJ; Wodak SJ Proteins; 2019 Dec; 87(12):1200-1221. PubMed ID: 31612567 [TBL] [Abstract][Full Text] [Related]
16. Integrative modeling of protein-protein interactions with pyDock for the new docking challenges. Rosell M; Rodríguez-Lumbreras LA; Romero-Durana M; Jiménez-García B; Díaz L; Fernández-Recio J Proteins; 2020 Aug; 88(8):999-1008. PubMed ID: 31746039 [TBL] [Abstract][Full Text] [Related]
17. Introducing a Clustering Step in a Consensus Approach for the Scoring of Protein-Protein Docking Models. Chermak E; De Donato R; Lensink MF; Petta A; Serra L; Scarano V; Cavallo L; Oliva R PLoS One; 2016; 11(11):e0166460. PubMed ID: 27846259 [TBL] [Abstract][Full Text] [Related]
18. Challenges and opportunities of automated protein-protein docking: HDOCK server vs human predictions in CAPRI Rounds 38-46. Yan Y; He J; Feng Y; Lin P; Tao H; Huang SY Proteins; 2020 Aug; 88(8):1055-1069. PubMed ID: 31994779 [TBL] [Abstract][Full Text] [Related]
19. Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models. El Houasli M; Maigret B; Devignes MD; Ghoorah AW; Grudinin S; Ritchie DW Proteins; 2017 Mar; 85(3):463-469. PubMed ID: 27701764 [TBL] [Abstract][Full Text] [Related]