186 related articles for article (PubMed ID: 28917952)
1. Identification of potential allosteric communication pathways between functional sites of the bacterial ribosome by graph and elastic network models.
Guzel P; Kurkcuoglu O
Biochim Biophys Acta Gen Subj; 2017 Dec; 1861(12):3131-3141. PubMed ID: 28917952
[TBL] [Abstract][Full Text] [Related]
2. Exploring allosteric communication in multiple states of the bacterial ribosome using residue network analysis.
Kürkçüoğlu Ö
Turk J Biol; 2018; 42(5):392-404. PubMed ID: 30930623
[TBL] [Abstract][Full Text] [Related]
3. Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model.
Guzel P; Yildirim HZ; Yuce M; Kurkcuoglu O
Front Mol Biosci; 2020; 7():586075. PubMed ID: 33102529
[TBL] [Abstract][Full Text] [Related]
4. Molecular Dynamics Investigation of a Mechanism of Allosteric Signal Transmission in Ribosomes.
Makarov GI; Golovin AV; Sumbatyan NV; Bogdanov AA
Biochemistry (Mosc); 2015 Aug; 80(8):1047-56. PubMed ID: 26547073
[TBL] [Abstract][Full Text] [Related]
5. Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.
Allain A; Chauvot de Beauchêne I; Langenfeld F; Guarracino Y; Laine E; Tchertanov L
Faraday Discuss; 2014; 169():303-21. PubMed ID: 25340971
[TBL] [Abstract][Full Text] [Related]
6. Ribosomal features essential for tna operon induction: tryptophan binding at the peptidyl transferase center.
Cruz-Vera LR; New A; Squires C; Yanofsky C
J Bacteriol; 2007 Apr; 189(8):3140-6. PubMed ID: 17293420
[TBL] [Abstract][Full Text] [Related]
7. The ribosome can discriminate the chirality of amino acids within its peptidyl-transferase center.
Englander MT; Avins JL; Fleisher RC; Liu B; Effraim PR; Wang J; Schulten K; Leyh TS; Gonzalez RL; Cornish VW
Proc Natl Acad Sci U S A; 2015 May; 112(19):6038-43. PubMed ID: 25918365
[TBL] [Abstract][Full Text] [Related]
8. The Ribosome as an Allosterically Regulated Molecular Machine.
Makarova TM; Bogdanov AA
Biochemistry (Mosc); 2017 Dec; 82(13):1557-1571. PubMed ID: 29523059
[TBL] [Abstract][Full Text] [Related]
9. Deciphering the role of dimer interface in intrinsic dynamics and allosteric pathways underlying the functional transformation of DNMT3A.
Liang Z; Hu J; Yan W; Jiang H; Hu G; Luo C
Biochim Biophys Acta Gen Subj; 2018 Jul; 1862(7):1667-1679. PubMed ID: 29674125
[TBL] [Abstract][Full Text] [Related]
10. Allosteric regulation of the ribosomal A site revealed by molecular dynamics simulations.
Makarova TM; Bogdanov AA
Biochimie; 2019 Dec; 167():179-186. PubMed ID: 31605738
[TBL] [Abstract][Full Text] [Related]
11. Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL.
Chennubhotla C; Yang Z; Bahar I
Mol Biosyst; 2008 Apr; 4(4):287-92. PubMed ID: 18354781
[TBL] [Abstract][Full Text] [Related]
12. Miscoding-induced stalling of substrate translocation on the bacterial ribosome.
Alejo JL; Blanchard SC
Proc Natl Acad Sci U S A; 2017 Oct; 114(41):E8603-E8610. PubMed ID: 28973849
[TBL] [Abstract][Full Text] [Related]
13. On the use of the antibiotic chloramphenicol to target polypeptide chain mimics to the ribosomal exit tunnel.
Mamos P; Krokidis MG; Papadas A; Karahalios P; Starosta AL; Wilson DN; Kalpaxis DL; Dinos GP
Biochimie; 2013 Sep; 95(9):1765-72. PubMed ID: 23770443
[TBL] [Abstract][Full Text] [Related]
14. Ribosome protection by antibiotic resistance ATP-binding cassette protein.
Su W; Kumar V; Ding Y; Ero R; Serra A; Lee BST; Wong ASW; Shi J; Sze SK; Yang L; Gao YG
Proc Natl Acad Sci U S A; 2018 May; 115(20):5157-5162. PubMed ID: 29712846
[TBL] [Abstract][Full Text] [Related]
15. Symmetry at the active site of the ribosome: structural and functional implications.
Agmon I; Bashan A; Zarivach R; Yonath A
Biol Chem; 2005 Sep; 386(9):833-44. PubMed ID: 16164408
[TBL] [Abstract][Full Text] [Related]
16. Regional discrimination and propagation of local rearrangements along the ribosomal exit tunnel.
Lu J; Deutsch C
J Mol Biol; 2014 Dec; 426(24):4061-4073. PubMed ID: 25308341
[TBL] [Abstract][Full Text] [Related]
17. Madumycin II inhibits peptide bond formation by forcing the peptidyl transferase center into an inactive state.
Osterman IA; Khabibullina NF; Komarova ES; Kasatsky P; Kartsev VG; Bogdanov AA; Dontsova OA; Konevega AL; Sergiev PV; Polikanov YS
Nucleic Acids Res; 2017 Jul; 45(12):7507-7514. PubMed ID: 28505372
[TBL] [Abstract][Full Text] [Related]
18. Biophysical simulations and structure-based modeling of residue interaction networks in the tumor suppressor proteins reveal functional role of cancer mutation hotspots in molecular communication.
Verkhivker GM
Biochim Biophys Acta Gen Subj; 2019 Jan; 1863(1):210-225. PubMed ID: 30339916
[TBL] [Abstract][Full Text] [Related]
19. Dual effect of chloramphenicol peptides on ribosome inhibition.
Bougas A; Vlachogiannis IA; Gatos D; Arenz S; Dinos GP
Amino Acids; 2017 May; 49(5):995-1004. PubMed ID: 28283906
[TBL] [Abstract][Full Text] [Related]
20. Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide.
Cruz-Vera LR; Gong M; Yanofsky C
Proc Natl Acad Sci U S A; 2006 Mar; 103(10):3598-603. PubMed ID: 16505360
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]