1376 related articles for article (PubMed ID: 28931057)
21. Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms.
Haznedaroglu BZ; Reeves D; Rismani-Yazdi H; Peccia J
BMC Bioinformatics; 2012 Jul; 13():170. PubMed ID: 22808927
[TBL] [Abstract][Full Text] [Related]
22. Comparing de novo and reference-based transcriptome assembly strategies by applying them to the blood-sucking bug Rhodnius prolixus.
Marchant A; Mougel F; Mendonça V; Quartier M; Jacquin-Joly E; da Rosa JA; Petit E; Harry M
Insect Biochem Mol Biol; 2016 Feb; 69():25-33. PubMed ID: 26005117
[TBL] [Abstract][Full Text] [Related]
23. Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome.
Visser EA; Wegrzyn JL; Steenkmap ET; Myburg AA; Naidoo S
BMC Genomics; 2015 Dec; 16():1057. PubMed ID: 26652261
[TBL] [Abstract][Full Text] [Related]
24. Assessing the impact of exact reads on reducing the error rate of read mapping.
Salari F; Zare-Mirakabad F; Sadeghi M; Rokni-Zadeh H
BMC Bioinformatics; 2018 Nov; 19(1):406. PubMed ID: 30400807
[TBL] [Abstract][Full Text] [Related]
25. Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms.
Cerveau N; Jackson DJ
BMC Bioinformatics; 2016 Dec; 17(1):525. PubMed ID: 27938328
[TBL] [Abstract][Full Text] [Related]
26. TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix.
Yoon S; Kim D; Kang K; Park WJ
BMC Genomics; 2018 Sep; 19(1):653. PubMed ID: 30180798
[TBL] [Abstract][Full Text] [Related]
27. Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks.
Cokus SJ; Gugger PF; Sork VL
BMC Genomics; 2015 Jul; 16(1):552. PubMed ID: 26215102
[TBL] [Abstract][Full Text] [Related]
28. Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome.
Guerrero-Sanchez VM; Maldonado-Alconada AM; Amil-Ruiz F; Verardi A; Jorrín-Novo JV; Rey MD
PLoS One; 2019; 14(1):e0210356. PubMed ID: 30650136
[TBL] [Abstract][Full Text] [Related]
29. A comparison of next generation sequencing technologies for transcriptome assembly and utility for RNA-Seq in a non-model bird.
Finseth FR; Harrison RG
PLoS One; 2014; 9(10):e108550. PubMed ID: 25279728
[TBL] [Abstract][Full Text] [Related]
30. Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq.
Lu B; Zeng Z; Shi T
Sci China Life Sci; 2013 Feb; 56(2):143-55. PubMed ID: 23393030
[TBL] [Abstract][Full Text] [Related]
31. Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance.
Feldmeyer B; Wheat CW; Krezdorn N; Rotter B; Pfenninger M
BMC Genomics; 2011 Jun; 12():317. PubMed ID: 21679424
[TBL] [Abstract][Full Text] [Related]
32. Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes.
Ockendon NF; O'Connell LA; Bush SJ; Monzón-Sandoval J; Barnes H; Székely T; Hofmann HA; Dorus S; Urrutia AO
Mol Ecol Resour; 2016 Mar; 16(2):446-58. PubMed ID: 26358618
[TBL] [Abstract][Full Text] [Related]
33. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
Stadermann KB; Weisshaar B; Holtgräwe D
BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912
[TBL] [Abstract][Full Text] [Related]
34. A comparative analysis of methods for de novo assembly of hymenopteran genomes using either haploid or diploid samples.
Yahav T; Privman E
Sci Rep; 2019 Apr; 9(1):6480. PubMed ID: 31019201
[TBL] [Abstract][Full Text] [Related]
35. Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Hotaling S; Wilcox ER; Heckenhauer J; Stewart RJ; Frandsen PB
BMC Genomics; 2023 Mar; 24(1):117. PubMed ID: 36927511
[TBL] [Abstract][Full Text] [Related]
36. De Novo Plant Transcriptome Assembly and Annotation Using Illumina RNA-Seq Reads.
Kerr SC; Gaiti F; Tanurdzic M
Methods Mol Biol; 2019; 1933():265-275. PubMed ID: 30945191
[TBL] [Abstract][Full Text] [Related]
37. A linked-read approach to museomics: Higher quality de novo genome assemblies from degraded tissues.
Colella JP; Tigano A; MacManes MD
Mol Ecol Resour; 2020 Jul; 20(4):856-870. PubMed ID: 32153100
[TBL] [Abstract][Full Text] [Related]
38. A high-quality annotated transcriptome of swine peripheral blood.
Liu H; Smith TPL; Nonneman DJ; Dekkers JCM; Tuggle CK
BMC Genomics; 2017 Jun; 18(1):479. PubMed ID: 28646867
[TBL] [Abstract][Full Text] [Related]
39. Comparison of assembly algorithms for improving rate of metatranscriptomic functional annotation.
Celaj A; Markle J; Danska J; Parkinson J
Microbiome; 2014; 2():39. PubMed ID: 25411636
[TBL] [Abstract][Full Text] [Related]
40. RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis.
Chow KS; Ghazali AK; Hoh CC; Mohd-Zainuddin Z
BMC Res Notes; 2014 Feb; 7():69. PubMed ID: 24484543
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]