These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. Adaptive Resolution Simulation of Supramolecular Water: The Concurrent Making, Breaking, and Remaking of Water Bundles. Zavadlav J; Marrink SJ; Praprotnik M J Chem Theory Comput; 2016 Aug; 12(8):4138-45. PubMed ID: 27409519 [TBL] [Abstract][Full Text] [Related]
6. Construction of dissipative particle dynamics models for complex fluids via the Mori-Zwanzig formulation. Li Z; Bian X; Caswell B; Karniadakis GE Soft Matter; 2014 Nov; 10(43):8659-72. PubMed ID: 25252001 [TBL] [Abstract][Full Text] [Related]
7. Adaptive resolution scheme for efficient hybrid atomistic-mesoscale molecular dynamics simulations of dense liquids. Praprotnik M; Delle Site L; Kremer K Phys Rev E Stat Nonlin Soft Matter Phys; 2006 Jun; 73(6 Pt 2):066701. PubMed ID: 16907017 [TBL] [Abstract][Full Text] [Related]
8. Concurrent coupling of atomistic simulation and mesoscopic hydrodynamics for flows over soft multi-functional surfaces. Wang Y; Li Z; Xu J; Yang C; Karniadakis GE Soft Matter; 2019 Feb; 15(8):1747-1757. PubMed ID: 30672954 [TBL] [Abstract][Full Text] [Related]
9. A multi-resolution particle/fluctuating hydrodynamics model for hybrid simulations of liquids based on the two-phase flow analogy. Hu J; Korotkin IA; Karabasov SA J Chem Phys; 2018 Aug; 149(8):084108. PubMed ID: 30193466 [TBL] [Abstract][Full Text] [Related]
10. Coupling atomistic and continuum hydrodynamics through a mesoscopic model: application to liquid water. Delgado-Buscalioni R; Kremer K; Praprotnik M J Chem Phys; 2009 Dec; 131(24):244107. PubMed ID: 20059054 [TBL] [Abstract][Full Text] [Related]
11. Coupling discrete and continuum concentration particle models for multiscale and hybrid molecular-continuum simulations. Petsev ND; Leal LG; Shell MS J Chem Phys; 2017 Dec; 147(23):234112. PubMed ID: 29272926 [TBL] [Abstract][Full Text] [Related]
12. Hybrid Atomistic and Coarse-Grained Molecular Dynamics Simulations of Polyethylene Glycol (PEG) in Explicit Water. Stanzione F; Jayaraman A J Phys Chem B; 2016 May; 120(17):4160-73. PubMed ID: 27108869 [TBL] [Abstract][Full Text] [Related]
13. A mesoscopic bridging scale method for fluids and coupling dissipative particle dynamics with continuum finite element method. Kojic M; Filipovic N; Tsuda A Comput Methods Appl Mech Eng; 2013 Jan; 197(6-8):821-833. PubMed ID: 23814322 [TBL] [Abstract][Full Text] [Related]
14. Reptational dynamics in dissipative particle dynamics simulations of polymer melts. Nikunen P; Vattulainen I; Karttunen M Phys Rev E Stat Nonlin Soft Matter Phys; 2007 Mar; 75(3 Pt 2):036713. PubMed ID: 17500832 [TBL] [Abstract][Full Text] [Related]
15. Recent progress in adaptive multiscale molecular dynamics simulations of soft matter. Nielsen SO; Bulo RE; Moore PB; Ensing B Phys Chem Chem Phys; 2010 Oct; 12(39):12401-14. PubMed ID: 20734007 [TBL] [Abstract][Full Text] [Related]
16. Generic Adaptive Resolution Method for Reverse Mapping of Polymers from Coarse-Grained to Atomistic Descriptions. Krajniak J; Pandiyan S; Nies E; Samaey G J Chem Theory Comput; 2016 Nov; 12(11):5549-5562. PubMed ID: 27685340 [TBL] [Abstract][Full Text] [Related]
17. Effective control of the transport coefficients of a coarse-grained liquid and polymer models using the dissipative particle dynamics and Lowe-Andersen equations of motion. Qian HJ; Liew CC; Müller-Plathe F Phys Chem Chem Phys; 2009 Mar; 11(12):1962-9. PubMed ID: 19280007 [TBL] [Abstract][Full Text] [Related]
18. Open Boundary Simulations of Proteins and Their Hydration Shells by Hamiltonian Adaptive Resolution Scheme. Tarenzi T; Calandrini V; Potestio R; Giorgetti A; Carloni P J Chem Theory Comput; 2017 Nov; 13(11):5647-5657. PubMed ID: 28992702 [TBL] [Abstract][Full Text] [Related]
19. Bottom-up derivation of conservative and dissipative interactions for coarse-grained molecular liquids with the conditional reversible work method. Deichmann G; Marcon V; van der Vegt NF J Chem Phys; 2014 Dec; 141(22):224109. PubMed ID: 25494734 [TBL] [Abstract][Full Text] [Related]