174 related articles for article (PubMed ID: 28961721)
1. Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data.
Zhu SJ; Almagro-Garcia J; McVean G
Bioinformatics; 2018 Jan; 34(1):9-15. PubMed ID: 28961721
[TBL] [Abstract][Full Text] [Related]
2. Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients.
Robinson T; Campino SG; Auburn S; Assefa SA; Polley SD; Manske M; MacInnis B; Rockett KA; Maslen GL; Sanders M; Quail MA; Chiodini PL; Kwiatkowski DP; Clark TG; Sutherland CJ
PLoS One; 2011; 6(8):e23204. PubMed ID: 21853089
[TBL] [Abstract][Full Text] [Related]
3. Rapid profiling of Plasmodium parasites from genome sequences to assist malaria control.
Phelan JE; Turkiewicz A; Manko E; Thorpe J; Vanheer LN; van de Vegte-Bolmer M; Ngoc NTH; Binh NTH; Thieu NQ; Gitaka J; Nolder D; Beshir KB; Dombrowski JG; Di Santi SM; Bousema T; Sutherland CJ; Campino S; Clark TG
Genome Med; 2023 Nov; 15(1):96. PubMed ID: 37950308
[TBL] [Abstract][Full Text] [Related]
4. Evaluation of a parasite-density based pooled targeted amplicon deep sequencing (TADS) method for molecular surveillance of Plasmodium falciparum drug resistance genes in Haiti.
Louha S; Herman C; Gupta M; Patel D; Kelley J; Oh JM; Guru J; Lemoine JF; Chang MA; Venkatachalam U; Rogier E; Talundzic E
PLoS One; 2022; 17(1):e0262616. PubMed ID: 35030215
[TBL] [Abstract][Full Text] [Related]
5. Using the Plasmodium mitochondrial genome for classifying mixed-species infections and inferring the geographical origin of P. falciparum parasites imported to the U.S.
Schmedes SE; Patel D; Kelley J; Udhayakumar V; Talundzic E
PLoS One; 2019; 14(4):e0215754. PubMed ID: 31039178
[TBL] [Abstract][Full Text] [Related]
6. Sensitive, Highly Multiplexed Sequencing of Microhaplotypes From the Plasmodium falciparum Heterozygome.
Tessema SK; Hathaway NJ; Teyssier NB; Murphy M; Chen A; Aydemir O; Duarte EM; Simone W; Colborn J; Saute F; Crawford E; Aide P; Bailey JA; Greenhouse B
J Infect Dis; 2022 Apr; 225(7):1227-1237. PubMed ID: 32840625
[TBL] [Abstract][Full Text] [Related]
7. A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity.
Miller RH; Hathaway NJ; Kharabora O; Mwandagalirwa K; Tshefu A; Meshnick SR; Taylor SM; Juliano JJ; Stewart VA; Bailey JA
Malar J; 2017 Dec; 16(1):490. PubMed ID: 29246158
[TBL] [Abstract][Full Text] [Related]
8. A Method for Amplicon Deep Sequencing of Drug Resistance Genes in Plasmodium falciparum Clinical Isolates from India.
Rao PN; Uplekar S; Kayal S; Mallick PK; Bandyopadhyay N; Kale S; Singh OP; Mohanty A; Mohanty S; Wassmer SC; Carlton JM
J Clin Microbiol; 2016 Jun; 54(6):1500-1511. PubMed ID: 27008882
[TBL] [Abstract][Full Text] [Related]
9. Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.
Crider K; Williams J; Qi YP; Gutman J; Yeung L; Mai C; Finkelstain J; Mehta S; Pons-Duran C; Menéndez C; Moraleda C; Rogers L; Daniels K; Green P
Cochrane Database Syst Rev; 2022 Feb; 2(2022):. PubMed ID: 36321557
[TBL] [Abstract][Full Text] [Related]
10. Plasmodium falciparum isolates from Angola show the StctVMNT haplotype in the pfcrt gene.
Gama BE; Pereira-Carvalho GA; Lutucuta Kosi FJ; Almeida de Oliveira NK; Fortes F; Rosenthal PJ; Daniel-Ribeiro CT; de Fátima Ferreira-da-Cruz M
Malar J; 2010 Jun; 9():174. PubMed ID: 20565881
[TBL] [Abstract][Full Text] [Related]
11. estMOI: estimating multiplicity of infection using parasite deep sequencing data.
Assefa SA; Preston MD; Campino S; Ocholla H; Sutherland CJ; Clark TG
Bioinformatics; 2014 May; 30(9):1292-4. PubMed ID: 24443379
[TBL] [Abstract][Full Text] [Related]
12. ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing.
Wong T; Deveson IW; Hardwick SA; Mercer TR
Bioinformatics; 2017 Jun; 33(11):1723-1724. PubMed ID: 28130232
[TBL] [Abstract][Full Text] [Related]
13. Genetic polymorphism of the N-terminal region in circumsporozoite surface protein of Plasmodium falciparum field isolates from Sudan.
Mohamed NS; Ali Albsheer MM; Abdelbagi H; Siddig EE; Mohamed MA; Ahmed AE; Omer RA; Muneer MS; Ahmed A; Osman HA; Ali MS; Eisa IM; Elbasheir MM
Malar J; 2019 Oct; 18(1):333. PubMed ID: 31570093
[TBL] [Abstract][Full Text] [Related]
14. A high-throughput method for quantifying alleles and haplotypes of the malaria vaccine candidate Plasmodium falciparum merozoite surface protein-1 19 kDa.
Takala SL; Smith DL; Stine OC; Coulibaly D; Thera MA; Doumbo OK; Plowe CV
Malar J; 2006 Apr; 5():31. PubMed ID: 16626494
[TBL] [Abstract][Full Text] [Related]
15. Pooled deep sequencing of Plasmodium falciparum isolates: an efficient and scalable tool to quantify prevailing malaria drug-resistance genotypes.
Taylor SM; Parobek CM; Aragam N; Ngasala BE; Mårtensson A; Meshnick SR; Juliano JJ
J Infect Dis; 2013 Dec; 208(12):1998-2006. PubMed ID: 23908494
[TBL] [Abstract][Full Text] [Related]
16. A novel metabarcoded 18S ribosomal DNA sequencing tool for the detection of Plasmodium species in malaria positive patients.
Wahab A; Shaukat A; Ali Q; Hussain M; Khan TA; Khan MAU; Rashid I; Saleem MA; Evans M; Sargison ND; Chaudhry U
Infect Genet Evol; 2020 Aug; 82():104305. PubMed ID: 32247865
[TBL] [Abstract][Full Text] [Related]
17. The origins and relatedness structure of mixed infections vary with local prevalence of
Zhu SJ; Hendry JA; Almagro-Garcia J; Pearson RD; Amato R; Miles A; Weiss DJ; Lucas TC; Nguyen M; Gething PW; Kwiatkowski D; McVean G;
Elife; 2019 Jul; 8():. PubMed ID: 31298657
[TBL] [Abstract][Full Text] [Related]
18. Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity.
Duffy CW; Assefa SA; Abugri J; Amoako N; Owusu-Agyei S; Anyorigiya T; MacInnis B; Kwiatkowski DP; Conway DJ; Awandare GA
BMC Genomics; 2015 Jul; 16(1):527. PubMed ID: 26173872
[TBL] [Abstract][Full Text] [Related]
19. Simulating the dynamics of targeted capture sequencing with CapSim.
Cao MD; Ganesamoorthy D; Zhou C; Coin LJM
Bioinformatics; 2018 Mar; 34(5):873-874. PubMed ID: 29092025
[TBL] [Abstract][Full Text] [Related]
20. Development of a new barcode-based, multiplex-PCR, next-generation-sequencing assay and data processing and analytical pipeline for multiplicity of infection detection of Plasmodium falciparum.
Mitchell RM; Zhou Z; Sheth M; Sergent S; Frace M; Nayak V; Hu B; Gimnig J; Ter Kuile F; Lindblade K; Slutsker L; Hamel MJ; Desai M; Otieno K; Kariuki S; Vigfusson Y; Shi YP
Malar J; 2021 Feb; 20(1):92. PubMed ID: 33593329
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
