BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

174 related articles for article (PubMed ID: 28961721)

  • 21. Detection of low-density Plasmodium falciparum infections using amplicon deep sequencing.
    Early AM; Daniels RF; Farrell TM; Grimsby J; Volkman SK; Wirth DF; MacInnis BL; Neafsey DE
    Malar J; 2019 Jul; 18(1):219. PubMed ID: 31262308
    [TBL] [Abstract][Full Text] [Related]  

  • 22. NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data.
    Huang N; Xu M; Nie F; Ni P; Xiao CL; Luo F; Wang J
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36548365
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Development of amplicon deep sequencing markers and data analysis pipeline for genotyping multi-clonal malaria infections.
    Lerch A; Koepfli C; Hofmann NE; Messerli C; Wilcox S; Kattenberg JH; Betuela I; O'Connor L; Mueller I; Felger I
    BMC Genomics; 2017 Nov; 18(1):864. PubMed ID: 29132317
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Mosdepth: quick coverage calculation for genomes and exomes.
    Pedersen BS; Quinlan AR
    Bioinformatics; 2018 Mar; 34(5):867-868. PubMed ID: 29096012
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Markers of anti-malarial drug resistance in Plasmodium falciparum isolates from Swaziland: identification of pfmdr1-86F in natural parasite isolates.
    Dlamini SV; Beshir K; Sutherland CJ
    Malar J; 2010 Mar; 9():68. PubMed ID: 20199676
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
    Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
    Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
    [TBL] [Abstract][Full Text] [Related]  

  • 27. piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.
    Han BW; Wang W; Zamore PD; Weng Z
    Bioinformatics; 2015 Feb; 31(4):593-5. PubMed ID: 25342065
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Amplicon deep sequencing improves Plasmodium falciparum genotyping in clinical trials of antimalarial drugs.
    Gruenberg M; Lerch A; Beck HP; Felger I
    Sci Rep; 2019 Nov; 9(1):17790. PubMed ID: 31780741
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Effect of malaria transmission reduction by insecticide-treated bed nets (ITNs) on the genetic diversity of Plasmodium falciparum merozoite surface protein (MSP-1) and circumsporozoite (CSP) in western Kenya.
    Kariuki SK; Njunge J; Muia A; Muluvi G; Gatei W; Ter Kuile F; Terlouw DJ; Hawley WA; Phillips-Howard PA; Nahlen BL; Lindblade KA; Hamel MJ; Slutsker L; Shi YP
    Malar J; 2013 Aug; 12():295. PubMed ID: 23978002
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier.
    Navarro-Gomez D; Leipzig J; Shen L; Lott M; Stassen AP; Wallace DC; Wiggs JL; Falk MJ; van Oven M; Gai X
    Bioinformatics; 2015 Apr; 31(8):1310-2. PubMed ID: 25505086
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Integrating long-range connectivity information into de Bruijn graphs.
    Turner I; Garimella KV; Iqbal Z; McVean G
    Bioinformatics; 2018 Aug; 34(15):2556-2565. PubMed ID: 29554215
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Overlap Extension Barcoding for the Next Generation Sequencing and Genotyping of Plasmodium falciparum in Individual Patients in Western Kenya.
    Levitt B; Obala A; Langdon S; Corcoran D; O'Meara WP; Taylor SM
    Sci Rep; 2017 Jan; 7():41108. PubMed ID: 28117350
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Molecular surveillance of anti-malarial resistance Pfdhfr and Pfdhps polymorphisms in African and Southeast Asia Plasmodium falciparum imported parasites to Wuhan, China.
    Jiang T; Cheng W; Yao Y; Tan H; Wu K; Li J
    Malar J; 2020 Nov; 19(1):434. PubMed ID: 33238987
    [TBL] [Abstract][Full Text] [Related]  

  • 34. SAGE2: parallel human genome assembly.
    Molnar M; Haghshenas E; Ilie L
    Bioinformatics; 2018 Feb; 34(4):678-680. PubMed ID: 29045591
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Assessment of genetic diversity of Plasmodium falciparum circumsporozoite protein in Sudan: the RTS,S leading malaria vaccine candidate.
    Mohamed NS; AbdElbagi H; Elsadig AR; Ahmed AE; Mohammed YO; Elssir LT; Elnour MB; Ali Y; Ali MS; Altahir O; Abubakr M; Siddig EE; Ahmed A; Omer RA
    Malar J; 2021 Nov; 20(1):436. PubMed ID: 34758827
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Comparative analysis of targeted next-generation sequencing for Plasmodium falciparum drug resistance markers.
    Kunasol C; Dondorp AM; Batty EM; Nakhonsri V; Sinjanakhom P; Day NPJ; Imwong M
    Sci Rep; 2022 Apr; 12(1):5563. PubMed ID: 35365711
    [TBL] [Abstract][Full Text] [Related]  

  • 37. KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies.
    Mapleson D; Garcia Accinelli G; Kettleborough G; Wright J; Clavijo BJ
    Bioinformatics; 2017 Feb; 33(4):574-576. PubMed ID: 27797770
    [TBL] [Abstract][Full Text] [Related]  

  • 38. ACE: accurate correction of errors using K-mer tries.
    Sheikhizadeh S; de Ridder D
    Bioinformatics; 2015 Oct; 31(19):3216-8. PubMed ID: 26026137
    [TBL] [Abstract][Full Text] [Related]  

  • 39. ARCS: scaffolding genome drafts with linked reads.
    Yeo S; Coombe L; Warren RL; Chu J; Birol I
    Bioinformatics; 2018 Mar; 34(5):725-731. PubMed ID: 29069293
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A new method for sequencing the hypervariable Plasmodium falciparum gene var2csa from clinical samples.
    Dara A; Travassos MA; Adams M; Schaffer DeRoo S; Drábek EF; Agrawal S; Laufer MK; Plowe CV; Silva JC
    Malar J; 2017 Aug; 16(1):343. PubMed ID: 28818101
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.