BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

131 related articles for article (PubMed ID: 28961932)

  • 1. MIRMMR: binary classification of microsatellite instability using methylation and mutations.
    Foltz SM; Liang WW; Xie M; Ding L
    Bioinformatics; 2017 Dec; 33(23):3799-3801. PubMed ID: 28961932
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BreakPoint Surveyor: a pipeline for structural variant visualization.
    Wyczalkowski MA; Wylie KM; Cao S; McLellan MD; Flynn J; Huang M; Ye K; Fan X; Chen K; Wendl MC; Ding L
    Bioinformatics; 2017 Oct; 33(19):3121-3122. PubMed ID: 28582538
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Krait: an ultrafast tool for genome-wide survey of microsatellites and primer design.
    Du L; Zhang C; Liu Q; Zhang X; Yue B; Hancock J
    Bioinformatics; 2018 Feb; 34(4):681-683. PubMed ID: 29048524
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SomaticSniper: identification of somatic point mutations in whole genome sequencing data.
    Larson DE; Harris CC; Chen K; Koboldt DC; Abbott TE; Dooling DJ; Ley TJ; Mardis ER; Wilson RK; Ding L
    Bioinformatics; 2012 Feb; 28(3):311-7. PubMed ID: 22155872
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Phyx: phylogenetic tools for unix.
    Brown JW; Walker JF; Smith SA
    Bioinformatics; 2017 Jun; 33(12):1886-1888. PubMed ID: 28174903
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CharGer: clinical Characterization of Germline variants.
    Scott AD; Huang KL; Weerasinghe A; Mashl RJ; Gao Q; Martins Rodrigues F; Wyczalkowski MA; Ding L
    Bioinformatics; 2019 Mar; 35(5):865-867. PubMed ID: 30102335
    [TBL] [Abstract][Full Text] [Related]  

  • 7. INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery.
    Zhang J; Mardis ER; Maher CA
    Bioinformatics; 2017 Feb; 33(4):555-557. PubMed ID: 27797777
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.
    Avvaru AK; Sowpati DT; Mishra RK
    Bioinformatics; 2018 Mar; 34(6):943-948. PubMed ID: 29121165
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accounting for tumor purity improves cancer subtype classification from DNA methylation data.
    Zhang W; Feng H; Wu H; Zheng X
    Bioinformatics; 2017 Sep; 33(17):2651-2657. PubMed ID: 28472248
    [TBL] [Abstract][Full Text] [Related]  

  • 10. G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram.
    Guo X; Zhang B; Zeng W; Zhao S; Ge D
    Bioinformatics; 2020 Feb; 36(3):928-929. PubMed ID: 31393560
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.
    Niu B; Ye K; Zhang Q; Lu C; Xie M; McLellan MD; Wendl MC; Ding L
    Bioinformatics; 2014 Apr; 30(7):1015-6. PubMed ID: 24371154
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Cancer driver gene discovery through an integrative genomics approach in a non-parametric Bayesian framework.
    Yang H; Wei Q; Zhong X; Yang H; Li B
    Bioinformatics; 2017 Feb; 33(4):483-490. PubMed ID: 27797769
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SVScore: an impact prediction tool for structural variation.
    Ganel L; Abel HJ; ; Hall IM
    Bioinformatics; 2017 Apr; 33(7):1083-1085. PubMed ID: 28031184
    [TBL] [Abstract][Full Text] [Related]  

  • 14. igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV).
    Robinson JT; Thorvaldsdottir H; Turner D; Mesirov JP
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36562559
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data.
    Ranjan P; Brown CA; Erb-Downward JR; Dickson RP
    Bioinformatics; 2022 Aug; 38(15):3830-3832. PubMed ID: 35695743
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Goldilocks: a tool for identifying genomic regions that are 'just right'.
    Nicholls SM; Clare A; Randall JC
    Bioinformatics; 2016 Jul; 32(13):2047-9. PubMed ID: 27153673
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data.
    Han X; Zhang S; Zhou DC; Wang D; He X; Yuan D; Li R; He J; Duan X; Wendl MC; Ding L; Niu B
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33461213
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ASCIIGenome: a command line genome browser for console terminals.
    Beraldi D
    Bioinformatics; 2017 May; 33(10):1568-1569. PubMed ID: 28119307
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MethylCoder: software pipeline for bisulfite-treated sequences.
    Pedersen B; Hsieh TF; Ibarra C; Fischer RL
    Bioinformatics; 2011 Sep; 27(17):2435-6. PubMed ID: 21724594
    [TBL] [Abstract][Full Text] [Related]  

  • 20. IntegratedMRF: random forest-based framework for integrating prediction from different data types.
    Rahman R; Otridge J; Pal R
    Bioinformatics; 2017 May; 33(9):1407-1410. PubMed ID: 28334269
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.