692 related articles for article (PubMed ID: 28968701)
1. Interactive network visualization in Jupyter notebooks: visJS2jupyter.
Rosenthal SB; Len J; Webster M; Gary A; Birmingham A; Fisch KM
Bioinformatics; 2018 Jan; 34(1):126-128. PubMed ID: 28968701
[TBL] [Abstract][Full Text] [Related]
2. NGLview-interactive molecular graphics for Jupyter notebooks.
Nguyen H; Case DA; Rose AS
Bioinformatics; 2018 Apr; 34(7):1241-1242. PubMed ID: 29236954
[TBL] [Abstract][Full Text] [Related]
3. ssbio: a Python framework for structural systems biology.
Mih N; Brunk E; Chen K; Catoiu E; Sastry A; Kavvas E; Monk JM; Zhang Z; Palsson BO
Bioinformatics; 2018 Jun; 34(12):2155-2157. PubMed ID: 29444205
[TBL] [Abstract][Full Text] [Related]
4. JBrowse Jupyter: a Python interface to JBrowse 2.
De Jesus Martinez T; Hershberg EA; Guo E; Stevens GJ; Diesh C; Xie P; Bridge C; Cain S; Haw R; Buels RM; Stein LD; Holmes IH
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36648320
[TBL] [Abstract][Full Text] [Related]
5. PyBEL: a computational framework for Biological Expression Language.
Hoyt CT; Konotopez A; Ebeling C; Wren J
Bioinformatics; 2018 Feb; 34(4):703-704. PubMed ID: 29048466
[TBL] [Abstract][Full Text] [Related]
6. Efficient population-scale variant analysis and prioritization with VAPr.
Birmingham A; Mark AM; Mazzaferro C; Xu G; Fisch KM
Bioinformatics; 2018 Aug; 34(16):2843-2845. PubMed ID: 29659724
[TBL] [Abstract][Full Text] [Related]
7. ndexr-an R package to interface with the network data exchange.
Auer F; Hammoud Z; Ishkin A; Pratt D; Ideker T; Kramer F
Bioinformatics; 2018 Feb; 34(4):716-717. PubMed ID: 29087446
[TBL] [Abstract][Full Text] [Related]
8. Gos: a declarative library for interactive genomics visualization in Python.
Manz T; L'Yi S; Gehlenborg N
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36688709
[TBL] [Abstract][Full Text] [Related]
9. Visualizing protein big data using Python and Jupyter notebooks.
Weiss CJ
Biochem Mol Biol Educ; 2022 Sep; 50(5):431-436. PubMed ID: 35403803
[TBL] [Abstract][Full Text] [Related]
10. Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses.
Menegidio FB; Jabes DL; Costa de Oliveira R; Nunes LR
Bioinformatics; 2018 Feb; 34(3):514-515. PubMed ID: 28968637
[TBL] [Abstract][Full Text] [Related]
11. Goldilocks: a tool for identifying genomic regions that are 'just right'.
Nicholls SM; Clare A; Randall JC
Bioinformatics; 2016 Jul; 32(13):2047-9. PubMed ID: 27153673
[TBL] [Abstract][Full Text] [Related]
12. iDINGO-integrative differential network analysis in genomics with Shiny application.
Class CA; Ha MJ; Baladandayuthapani V; Do KA
Bioinformatics; 2018 Apr; 34(7):1243-1245. PubMed ID: 29194470
[TBL] [Abstract][Full Text] [Related]
13. SPV: a JavaScript Signaling Pathway Visualizer.
Calderone A; Cesareni G
Bioinformatics; 2018 Aug; 34(15):2684-2686. PubMed ID: 29590303
[TBL] [Abstract][Full Text] [Related]
14. Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties.
Bergstrand LH; Neufeld JD; Doxey AC
Bioinformatics; 2019 Dec; 35(23):5063-5065. PubMed ID: 31240307
[TBL] [Abstract][Full Text] [Related]
15. DiffGraph: an R package for identifying gene network rewiring using differential graphical models.
Zhang XF; Ou-Yang L; Yang S; Hu X; Yan H
Bioinformatics; 2018 May; 34(9):1571-1573. PubMed ID: 29309511
[TBL] [Abstract][Full Text] [Related]
16. EGAD: ultra-fast functional analysis of gene networks.
Ballouz S; Weber M; Pavlidis P; Gillis J
Bioinformatics; 2017 Feb; 33(4):612-614. PubMed ID: 27993773
[TBL] [Abstract][Full Text] [Related]
17. Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions.
Medlock GL; Moutinho TJ; Papin JA
PLoS Comput Biol; 2020 Apr; 16(4):e1007847. PubMed ID: 32348298
[TBL] [Abstract][Full Text] [Related]
18. Rabifier2: an improved bioinformatic classifier of Rab GTPases.
Surkont J; Diekmann Y; Pereira-Leal JB
Bioinformatics; 2017 Feb; 33(4):568-570. PubMed ID: 27797763
[TBL] [Abstract][Full Text] [Related]
19. PyIOmica: longitudinal omics analysis and trend identification.
Domanskyi S; Piermarocchi C; Mias GI
Bioinformatics; 2020 Apr; 36(7):2306-2307. PubMed ID: 31778155
[TBL] [Abstract][Full Text] [Related]
20. PyChimera: use UCSF Chimera modules in any Python 2.7 project.
RodrÃguez-Guerra Pedregal J; Maréchal JD
Bioinformatics; 2018 May; 34(10):1784-1785. PubMed ID: 29340616
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
